Branchiostoma floridae (Florida lancelet): 118417178
Help
Entry
118417178 CDS
T01074
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118417178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118417178
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118417178
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118417178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
118417178
NCBI-ProteinID:
XP_035678510
UniProt:
A0A9J7LAE6
LinkDB
All DBs
Position
6:complement(5112428..5158138)
Genome browser
AA seq
2548 aa
AA seq
DB search
MNLDSLSLALSQISYAVANLSKKNFKSSVAEISRLVDQHGPEADRHLYRCLFSHVDFSGD
GKSGGKDYHQTQLLIQECETLITKPTFVSTLCYAVDFPLHHQKSLKPSVQLFPQLTKVLK
LNKIQEVVFGLALLNSSILEVRNYAAQFVKQKLPDLLRTFTDPDLNSGSEESLNDIAIQV
LHLLLIHLHGPKDKFGIGAEQKEAFIAILKQDFPNERCPVVLTPFLYPDKQDITIERLVS
QGESSTVPRDMMEGSLAELMQEVGYGCCASVEECRNTLLQFGVREVTPAVVARVLGMMAR
THVGLSDSIPLQSLTSPGGSIWSEGKDKSEGGQAQSWSVDVFVDVLQDLAPHLNWREVIF
ELDHPGLLIKDSQGLRLLTSALTRALANQDVFPIDLMYRQWKNTEGQLSWFQVALSSPDV
FCFADFPCHQVVIDILKSPPDDENREIATWKSLDLIETLLRLSELGHYDQVKGLFNFPIK
HCPDMLVLGLLQVNPNWHTLRHELISTLMPIFLGSHPNSAIVLHYAWHGQGQSPSIRQLV
MHSMAEWYMRGEAHDQQRLSRILDVAQDLKALSMLLNGTPFAFVIDLACLASRREYLKLD
KWLTDKIREHGEPFIQACVTFLKRRVPQVMGGPPPDKEPPKSAQLPPETIGTMLACLQAC
ANNVSQELSETILTMVGNCSQILNKARQPPPGAANVSIKQRPPSGLPPTSGLENISPVIT
SQPHLSPGWKGDDLPYVSQIDPLAGISSLSLSGNSGAGTIGPGPLAPGNIGGGPIGSGTI
GSGTIGSGAIGTGSIGPGSIGPGSIGPGSIGPGPIGGGFQSANPLAASFAPPQSPQKQFP
VSRDQFPPFSSSGQTSFSSMGSLTSQMQGLGSSSSSGGIPSSNPLAAAFAPPPTSQKDSS
SRDQFPPLSTSAGQTPFSSMGGFTSQIQGLGTTGSLGMAGMGGAFGQKTGSIGSSQQAAL
AQQKAASSLRQDVSNVWPEMNQQFSKEIDDEANSYFQRIYNHPPNPTMSIDEVLEMLKKF
RDSPIKRERDVFHCMLRNLYQEYRYFHQYPTRELQITATLFGGLIAEGIVSYMALGIALR
YVLEALRKPHGSKMYYFGIAALDRFKTRLKDYPQYCQHLAAIPHFQEFPAHLIEYVEFGQ
QSREPPIKMAAPSTSPPLSLGKTSSTMATTLTTTVTTTAVSTASGGESPFKVTSKVSSTP
PLRPGQSPSIANATNIDTLLAGNDAQNKKLEPPEVLQDKVAFIFNNLSQSNLNQKTEELR
DAVGEEYLPWVSQYLVMKRASIEPNFHTLYSNFIDVLKNPDVTQMVIKETFRNIKVLLQA
DKGAANFSDRSLLKNLGHWMGMLTLAKNKPILQIDIDIKSLLLEAYHKGHQELLYVVPFV
AKVLESCSKSKVFKPPNPWTLAIMNVLSELHQEPDLKLNLKFEIEVLCKTLNLDIADLKP
GNYLKDKDKLSQIEEQLSAPKNDKPVEEVQHVSTTGMPSVTSTTTTTTTTAVPTIPPEPK
FSFHDVNTMTFAGLAPHISISNNVPLFTAHPQLKACVRPAIERSVQELVHPVVERSIKIA
MTTCEQIVKKDFALDPEEARMRAAAHHMVRYMTAGMAMITCREPLYVSIDNNLKTSFLTT
LRGATQQQKEMIEQAASMIAQENVELACAFIQKSAVEKAIPEMDKRLATEFELRKHARNE
GRRYCDPVVLTYQAERMPEQIRLKVGGVTAQQTAVYEEFARQIPGFLPTNEANQPSGFLA
KPMPPALSAVNRDQAATEDKEARDGMKSFATDEITQIYDRIISELEQHLHAILAPPTNQQ
VAAMHSLLEAVILARNSREIVTALALLQKAVEGLLDGLTQLPSDPELALRFRDAHLLVLK
GLQDQRAYGPHWTNKQVTRVLCECREELKYNLEAVNCLVRARLINMQQYDTHLAQSMENG
LNFMAVTFAMQLVRLHLIDERNSSDVTEADLYNTVENLARIAAHSRNAPEGLAALVDVIR
QNHDTILDRAPGGPTSMMHSGISQAREYDDPPGLHEKSEYLLREWVNMYHSPAAGRDSSK
AFQVFVQQMHQQGILKTDDLITRFFRLCTEMCVDLCYRALSEASHNPTLLRAKCFHTLDA
YVRLIALLVKHSGDATNTVTKINLLNKVLGIIVGVLLQDHEVRGTDFQQLPYHRLFIMLL
LELNAPEHVLESINFQVLTAFCNTFHILRPSKAPGFAYAWLELVSHRVFIARMLALTSNQ
KLGVNKSVSSVLQGWGMYAQLLIDLFKFLAPFLRNVELTKPMQLLYKGTLRVLLVLLHDF
PEFLCDYHYSFVDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLPEINHPPRILT
NFAALIQPSSFKKDLDTYLKTRAPVTFLSDLRSNLQVSTEPGLCYNISLMNALVLYVGTQ
AITYIHTKGSTPSMNTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFS
CTLLYLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPTFKFWNHDFVHC
APEIEKLFESVARSCMQQKHPQHVEAHE
NT seq
7647 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactcgttgtcgctggccctgtctcaaatcagttacgctgtggcgaatctg
agcaagaagaacttcaagtcgagcgttgcggaaatctctcgtcttgttgatcaacacggg
cctgaggcagatcgtcacttgtaccgttgcctcttctcacatgtggatttcagtggggat
ggtaaaagtggtggaaaagactatcaccagacacagctgctgatacaagagtgtgaaacc
ctgataacaaagcctacctttgtgtctacattgtgctacgctgtagacttccccctccac
catcaaaaaagtttaaagccgtctgtgcagctttttcctcagctgaccaaggttctcaaa
ctcaacaaaatccaggaggttgtgtttgggcttgcattgttaaattcgtccattctagag
gttcgaaactacgccgcccagtttgtgaaacagaaacttcctgatctgctcagaaccttc
actgatcctgacctgaacagtggttctgaggaaagtttgaacgacatcgctatccaggtg
ctccatttgctgctcatccatttacacggacccaaggacaagtttggaatcggcgctgag
cagaaggaagcattcatagctatcctaaaacaagatttccccaacgagaggtgtccggtg
gttctgacacctttcctgtacccagacaaacaggacatcacgatagagcgactggttagt
caaggagagtcaagcactgtgccaagagatatgatggagggttctttggctgaattgatg
caagaagttggatatggctgctgtgccagtgttgaagaatgtaggaacaccctgctgcag
ttcggtgtccgtgaggtcacccctgcggtggtggcccgggttctggggatgatggctcgc
acacatgtcgggctgtcagacagcattccgctacagtccctgaccagcccaggaggcagt
atatggagtgaagggaaggacaagtcggagggcggccaggcccagtcctggtccgtggat
gtcttcgtagatgtgctgcaggatctggctccccacctgaactggcgagaggtgatattt
gagctggaccaccccgggttgcttataaaggattcccaggggctacggctcctcacctct
gccctcaccagggccctggccaatcaggacgtctttcccattgacctgatgtatcgccag
tggaagaacacagagggacagctatcgtggttccaagtggctctatccagcccagacgtg
ttctgttttgctgatttcccctgtcaccaagtcgtcatcgacatcttaaagtctccgcct
gatgatgaaaacagagaaatagccacctggaagtccctagacttgatagaaactctgctg
cggctgtccgagctgggtcactacgaccaggtcaaaggtctcttcaactttcccatcaag
cactgcccagacatgctggtcctggggctactgcaggtcaatcccaattggcacaccctt
cgtcacgagttgatctccaccctgatgcccatcttcctgggctcccaccccaactccgcc
atcgtcctgcactacgcctggcatggccagggacagagcccctccatccgccagctcgtc
atgcactccatggctgagtggtacatgaggggagaggcacacgaccaacagaggctctcc
aggatcctggatgtggctcaggacttaaaggcactctccatgctgttgaacggcactccc
tttgccttcgtcatcgacctcgcctgcctggcttcgcgccgcgagtacctcaagctggac
aaatggctgaccgataagatccgtgagcacggcgaacccttcatccaggcctgcgtgacc
ttcctgaagcgccgcgtgccccaggtcatgggaggaccgccccccgacaaggaaccgccc
aagtcagcacagcttcctccggaaaccataggtaccatgctagcctgcctgcaggcctgc
gccaacaacgtttcgcaggagttgtcggagacgatcctgacgatggtggggaactgcagc
cagatcctgaacaaggcgagacagccgccgcccggagcagcgaatgtttccatcaagcag
cgtccgcccagcggactgcctcccacctcgggcctggagaacatctcacctgtcatcaca
tcacagccgcacctgtccccaggttggaagggcgatgacctcccgtacgtgtcccagatc
gaccctctggctggaatatcctccttatccctgagcgggaactctggagccggaactatc
ggaccaggacctctcgctccggggaacattgggggaggaccaatcggatcgggtacgatc
ggatcgggaacaatcgggtcgggggccatcggaacgggcagtattggtccagggagtatc
ggaccggggagtatcggcccggggagcattggaccaggtcccatcggtggtggatttcag
tcggcaaacccgcttgctgcgtcgtttgcgccgccgcagtctccacagaagcagttcccg
gtttcgcgggaccagttcccacccttctccagttcaggacagacttcgttttcctccatg
ggcagcctcacgtcacaaatgcaaggactgggatccagcagttccagtggggggataccc
tcctccaaccccctggcggctgccttcgcaccccctccgacctcccagaaggactcatcc
agtcgtgaccagttcccccctctctccacgtccgcggggcagactcccttctcgtccatg
ggagggttcacatcacaaattcaaggattgggaacaacaggcagcctgggaatggccggt
atgggcggtgcatttgggcagaagactggcagcatcgggagctcccagcaggcagcgctg
gcacagcagaaggcagccagcagtctgcgccaagacgtttcgaacgtgtggccagagatg
aaccagcagttctccaaggagatcgacgacgaagccaacagctacttccagcgcatctac
aaccacccgcccaaccccaccatgtccatcgacgaggtcttagagatgctgaagaagttt
cgggattcccccatcaaaagagaaagggatgtattccactgtatgctgcgtaacctgtac
caggagtatcggtacttccaccagtaccccacccgggagctgcaaatcactgctactctg
ttcggtggactcatagcggaaggaattgtctcgtacatggcactaggcatagccctgagg
tatgtgttggaggccttgaggaaaccccatggaagcaaaatgtactacttcggcatagct
gctctggaccgcttcaagactagattgaaggactacccccagtattgccagcaccttgct
gccataccacatttccaggagttccctgcacatctcattgagtacgtagagtttggccag
cagtcgcgggaacctcccatcaagatggcggccccatccaccagccctccgctgagccta
ggcaaaacgtcgtccacgatggccacgactctaaccacgaccgtaacaacgactgccgtc
agcacggcatctgggggtgagtcgcccttcaaagttaccagtaaggtcagctctacgcca
cccctcagacctggtcagagtccttccattgccaatgccacaaacattgacaccctgctg
gcaggaaacgacgcccagaacaagaagttagaaccaccagaagtacttcaggacaaagtg
gctttcatcttcaataatctgtcccagtccaaccttaaccagaagactgaagaattacgt
gatgccgttggtgaggagtacttaccctgggtgtcgcagtacctcgtcatgaaacgggcc
agcatcgagcccaacttccacaccctgtactccaacttcatcgacgtgctgaagaaccca
gacgtcacccagatggtcatcaaggaaaccttccgcaatatcaaggttctactgcaggct
gacaaaggagctgccaacttctctgatcgctcccttctaaagaacttgggccactggatg
ggcatgctgacactggccaagaacaagcccattctgcagatagacatagacatcaagtcc
cttctactggaggcctaccacaaaggacaccaggagctgctgtatgtcgtcccctttgtt
gccaaagtgctggagtcgtgttcgaagagtaaggtgttcaagccgcccaacccctggact
ctcgccatcatgaacgtcctgtccgaactgcaccaggagccggacctgaaactcaacctc
aagttcgagatagaagtactctgcaagaccctcaatctggacatcgctgatctgaaacca
ggaaactacctgaaagacaaagacaaactgtctcagattgaggagcaactctccgcgccg
aagaatgacaagccagtggaggaagtccagcatgtgtccaccacgggtatgccttcagtg
acctccactaccaccaccacaactaccacggcggtccccactataccaccagaaccgaag
ttcagcttccacgatgtgaacaccatgacattcgcaggcctggccccacatatctctatt
agtaacaatgtccccttgtttacggcccacccccaactgaaggcctgtgtgcgccctgcc
atcgagcggtcggtccaagagctggtccatccggtcgtagagaggtccatcaagattgcc
atgacaacgtgcgaacagatagtcaaaaaggactttgcccttgacccagaagaggcgcgc
atgcgagcggcggcacaccacatggtgcggtacatgacggcagggatggcaatgatcacc
tgtcgggaaccgctgtacgtcagcatcgacaacaacctcaagaccagcttcctcactaca
ctcaggggtgcgacccagcagcagaaggagatgatagaacaggcagctagcatgatcgcc
caggagaacgtggagctggcctgcgccttcatccagaagtctgcggtggagaaggccatc
ccggagatggacaagcgcctggccacggagttcgagctacggaaacacgcccggaacgag
gggcggcgctactgcgatcccgtggtgctgacctatcaggccgagcgcatgccggaacag
atcaggctgaaggtagggggcgtgactgcccagcagactgcggtgtatgaggagttcgcc
cgacagataccaggatttctgcccaccaacgaggccaaccagcctagcggcttcttggca
aagccaatgcctcctgccctttcagcagttaaccgtgaccaggctgctacggaggataaa
gaagccagagatgggatgaagtcctttgccacggacgagatcacgcagatctacgaccgg
atcatcagcgagcttgagcagcacctgcacgcgatcctggcgccgcccaccaaccagcag
gtggccgccatgcacagcctgctggaggccgtcatcctcgcccgcaactcccgcgagatc
gtcacagcactcgccctcctgcagaaggctgtggagggcctgttggacggactgacccag
ctgccctctgaccccgagctggccctgcgcttcagggatgctcacctcctggtgctgaag
ggtctgcaggaccaacgggcttacggaccccactggaccaacaagcaagtcacaagggtt
ctgtgtgagtgtcgggaagagctgaagtacaacctggaggctgtgaactgtctagtccgc
gcacgactcatcaacatgcagcagtacgacacacatttggcacagagtatggagaatggt
ctgaacttcatggcagtgacgtttgcgatgcagttggtgcgcctgcacctgatcgatgag
aggaacagctccgacgtgacggaggctgacctgtataacaccgtggaaaacctcgcacgc
atcgccgcacactccagaaatgctccggaaggccttgctgctctggtggacgtcattcgc
cagaaccacgacaccatcctggaccgcgccccgggagggccgacctccatgatgcattct
gggatatcgcaagcccgcgagtacgacgaccctcccggcctgcatgagaagtcggagtac
ctgctccgcgagtgggtcaacatgtaccactcgccggcagcaggacgggacagctccaag
gcttttcaagtcttcgttcagcagatgcatcagcagggtatcctgaagaccgatgacctc
atcacgcggttcttccggctgtgtacagagatgtgcgtggacctgtgctaccgcgccctc
agcgaggcttcccacaatcccacgctgctgcgcgccaagtgtttccacacgctggacgcg
tacgttcgcctcatcgcactcctggtgaagcacagcggagacgccaccaacaccgtcacc
aagatcaacctgctcaacaaggttctaggcatcattgtgggagtccttctgcaggaccac
gaggtccgcggcacggacttccagcagcttccgtaccaccgcctctttatcatgctgctc
ctcgagctcaacgcgcccgagcacgtcctcgagtccatcaactttcaagtcctcacagcc
ttttgcaacacattccacatcctgcgtccatccaaggcgccagggttcgcctacgcctgg
ctggagctggtctcgcacagggtcttcatcgcccgcatgctggcgctcacgtccaaccag
aaacttggagtcaacaagagtgtgtcctcggttctccaaggctggggcatgtacgcccag
ctgctcatcgacctcttcaagttcctggctcccttcctgcgtaatgtggagctgaccaag
ccaatgcagctgctatacaagggtaccctgcgcgttctgctcgtgctgctccacgatttc
ccagagttcctgtgtgactaccactacagcttcgtcgacgtcatcccgccaaactgcatc
cagatgaggaacctgattctcagtgccttcccccgcaatatgcgcctccctgaccccttc
acacccaacctaaaggtggacatgttgccagagattaaccacccaccccgcatcctcacc
aacttcgctgccttgatccagccttcttccttcaaaaaggacctggacacgtacctgaag
acgcgcgctcctgtcaccttcctctcggacctgcgcagcaacctgcaggtgtcgacggag
ccggggttgtgctacaacatctccctgatgaacgcgctggtgctgtatgtgggcacccag
gccatcacttacattcacactaagggcagcaccccatccatgaacaccatcacgcacagc
gcgcacatggacatcttccagaacctcgccgtcgacctggacacagaaggccgctacctg
ttcctgaatgccatagccaaccagctgcgttaccccaacagccatacccactacttcagc
tgcaccctgctgtacctcttcgcagaggccaactcagaggccatccaggaacaaatcact
agggtactgttggaacgtttgatagtgaaccgaccacacccgtggggcctgctcatcacc
ttcatcgaactcatcaaaaacccaaccttcaagttctggaaccacgactttgtccactgc
gctcccgaaatcgagaagctgttcgagtcggttgcccgtagctgcatgcagcagaaacac
ccgcagcacgttgaggcacacgagtga
DBGET
integrated database retrieval system
