Branchiostoma floridae (Florida lancelet): 118420599
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Entry
118420599 CDS
T01074
Name
(RefSeq) collagen alpha-1(V) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118420599
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118420599
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118420599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
118420599
NCBI-ProteinID:
XP_035683321
UniProt:
A0A9J7LI16
LinkDB
All DBs
Position
8:13493650..13576504
Genome browser
AA seq
1695 aa
AA seq
DB search
MDIKSVAVRWIYHGRTRSDSTLAALLLAVLISLHVATIAGIELPEGSADLIDIFQLRGLP
KGINKAIGFCENRPDGPDVAYRVSKDATLVVPTTELFPNGAEKTFPVDFSVLLTVKPSLA
SRSYLFTVIVENNVQFGVQLADVDWVFLYGDAEGRPGFEESPRFNYNVADGQWHRIAFSV
QRNKVSMIMDCDTEKEVTMDLDRSPGQEGAISTDGMTALFRHFFRENVAFEGLVQDIMII
PDPLAAYEQCIKYTPDCPKNGTSTDGFDGNSNGFDLFDKIDFDADLNRGVTTDFGTEEIG
LFGDPNVKGQKGEPAVIEPGMFIPGSRGYPGPAGIPGPRGYPGPAGDPGPAGPRGPRGRE
GLPGADGLPGPPGPGISIPLSMLGSLGMGADCSKGPGGCNEAAMAEQIMAGMIGPPGPSG
PVGMAGRPGPSGLQGGLGPKGDVGEMGQMGPRGPRGPMGPPGKDGKRGRHGKDGGRGPPG
QDGLKGERGFDGLPGLPGQKGNRGGHGSPGPSGPPGDIGDKGDDGERGLPGMPGEPGQRG
LMGPRGPPGVQGPPGMPGNMGPGGMKGATGAPGKPGAPGPQGLIGPPGSPGPQGAVGPPG
LTGPSGKPGLPGLPGVDGLPGHPGKEGVPGPKGATGPPGPQGPVGYPGSRGIKGSQGTRG
PPGQKGDKGEDGFPGFKGDQGPKGDRGIGGEIGPRGQEGPEGPKGRSGAPGDPGPPGSPG
EKGKMGIPGLPGYPGRMGPKGSRGFEGPKGRPGEPGKRGTTGKPGGRGQRGKRGETGARG
SPGPSGPMGIKGDPGENGPAGGPGERGPPGPQGPPGFPGPKGPIGPGGKDGIPGHPGPRG
ESGFQGKTGPPGPAGVIGPPGGQGDVGAAGNRGFPGPQGRPGEQGLPGTEGKDGERGPPG
LPGESGKVGPPGLAGFPGPRGLRGPPGTPGTKGDPGPRGEGGPDGSPGPRGEPGPVGPIG
VPGRPGQPGPPGPAGEKGEQGEEGIMGGPGRDGLPGSQGLPGGPGPAGPPGEPGDKGDMG
IQGGRGNKGARGDPGPSGPSGPPGPIGRPGPAGNDGEPGPRGIQGNFGQKGDDGPRGFPG
PPGPLGLQGMPGPPGIKGDQGDPGPLGPPGPEGPRGNPGPSGADGPQGPPGKRGQPGRPG
EKGEPGDPGQPGLPGDAGGPGAKGDPGPKGEDGSSGMPGPSGKPGPRGEDGPKGDPGPIG
APGDPGPVGIPGPPGQDGESGVKGDRGDRGQQGRPGPSGEQGPPGPPGKQGVPGLPGLEG
PSGISGDKGDSGETGPPGQAGPVGPPGPPGKSGPEGLRGIPGPPGQQGPPGPSGDPGPPG
IPGSRGVSGLKGDPGPKGEKGHPGLIGLTGPIGPPGEKGERGLPGLDGPIGPKGDSGNDG
PRGGPGEQGTTGLPGGRGIKGSKGYMGPAGPKGEVGAPGPPGPPGPPGGERTPLPLNIQK
KTKRDVSDDDDLEGYQGGEGDGISFLDYEAGMEEIFGSLNSLKIEIEQMKAPLGTRDNPA
RTCKDLYMCHKTFPDGMYWIDPNQGCSKDAIQVFCNLTAGGETCVEPDEMRKSHRMATWK
DENPKDWFSDYIRGFPISYTRVGVVQLTFLRLLHAKATQNFTYYCSNSIAWYDSKTGRHS
KAIMLQGNNDIEYAWDSKTKPNVISDGCKDREYGKTVFEITTAKMFELPITDLKVVDIGK
ADQRFGFEVGPICFS
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggatataaagagtgtagcagttcggtggatttaccacgggagaacgcgttcggactcc
acgttagcagccctgcttctagcagttcttatttcgctccatgtggcgacgatagcagga
attgagcttcccgaggggtctgcagacctcatagatatatttcaattaaggggtttacca
aaggggatcaacaaagcaataggtttctgtgaaaaccggcctgatggacctgatgtggcg
tacagagtttcaaaagatgcaacactggtggttcctaccacagagctcttcccaaatggt
gcagagaagactttccctgttgacttctccgtgttattaacggtgaagccttcgcttgca
tcacggtcctacctcttcactgtcattgttgaaaataatgtgcagtttggtgtacaactg
gctgatgttgactgggtattcctgtatggggacgccgagggcagaccaggattcgaagag
tcaccccgatttaactacaatgtagcagacggacagtggcacagaatagccttcagtgtt
cagaggaacaaggtctccatgattatggactgtgacaccgaaaaggaagtaaccatggac
ttggaccggtccccaggacaggagggtgccatcagcacggacggcatgactgctctcttc
agacacttcttccgggagaatgttgcttttgagggcttggtacaggacatcatgatcatt
ccagacccattggcagcttacgagcagtgcatcaagtacaccccagactgccccaaaaat
ggaacaagcactgatggatttgatggcaacagcaacggctttgacttgtttgacaaaatt
gacttcgacgcagacttgaatagaggagtcactacggactttggcacggaggaaattgga
ctttttggcgatcccaatgtcaaagggcagaagggtgagcctgctgttatcgaacctggc
atgttcatcccaggatctcgaggctacccaggtcctgccggtatcccgggaccaagaggt
taccctggcccagctggagaccctggtcctgcaggcccaaggggtccccgtggcagagaa
ggtcttcctggtgctgacggactgcctggacctcctggccctggaatctccatccctctg
tctatgctggggagtctgggaatgggtgctgactgcagtaagggaccaggcggctgtaac
gaggcagccatggcagagcagatcatggcaggaatgattggaccacctggcccttctggt
cctgttggcatggctggaagacctggaccttctggtctacaaggaggccttggacctaag
ggtgatgttggagagatggggcaaatgggtccaagagggcctagaggaccaatgggacca
ccgggcaaggatggtaaaaggggaagacacggcaaagatggaggaagaggcccacctgga
caagatggtcttaagggcgagaggggcttcgatggtctcccaggtctgcctggacaaaag
ggtaaccggggtggtcatggttcacctgggccttctggtcctcctggagacattggagac
aagggagacgatggagagcgtggactgcctggaatgcccggtgagccgggtcagcgaggt
ctgatgggtccccgtggccccccaggtgtccagggtcctcctggcatgcctggtaacatg
ggacctggaggcatgaagggtgcaacgggagccccaggtaaaccaggtgcgcctggtccc
cagggtctgatcggaccacctggatcccccggaccgcagggagctgtaggaccacctggt
ctcacgggtccatcaggaaagcccggtctgcctggtctgcctggagttgatggcctacct
ggccatccaggtaaggagggagtacccggacccaagggtgctacaggaccccctggacca
cagggccctgtcggctatcccgggagcagaggcataaagggatcccaaggaacaagaggt
ccacctggccagaagggagacaagggagaagacggattcccaggtttcaagggtgaccaa
ggccccaagggtgaccggggtatcggaggtgaaatcggaccccgtggacaagagggacct
gaaggccccaagggccgttctggagcacctggcgatcctggaccccctggctcacctggt
gaaaagggtaaaatgggtatccccggccttcctggataccctgggcggatgggacctaag
ggatcccgtggttttgagggacctaaaggcagacctggggaaccaggaaagaggggcact
acaggcaagcctggtggacgtggtcagaggggcaaacgtggagagacaggagctcgtggg
tcaccaggaccatctgggccaatgggaataaagggcgatcctggtgagaatggaccagca
ggtggaccaggagagaggggaccaccaggacctcagggaccccctggattcccaggacca
aagggaccaattggaccaggaggaaaggacggaatcccaggacatccaggaccgcgtgga
gaatctggtttccaaggaaagactggtccccctggccctgctggtgtgattgggccgcct
ggcggtcaaggcgatgtcggagctgcaggcaatcgtggtttccctggacctcagggtaga
ccaggtgaacaaggattacctggaacagaaggcaaggatggagaaaggggtcctcctggt
ctccctggagagtctggaaaggtgggcccacctggactggctggcttccccggacctcgt
ggcttgagagggccacctggaacccctggtactaaaggtgatcctggacctagaggcgag
ggtggaccagatggctcccctggcccaagaggagagcctggcccagtcggccccatcggt
gtgcccggccgtcctggccagcccggtccccccggccctgccggcgagaagggagagcag
ggagaggagggcatcatgggaggacctggccgagacggacttcccggctcccaaggtttg
cctggaggacccggacctgctggaccccccggagagcctggtgataagggtgacatgggt
atccaaggcggcagaggtaacaagggagctcgaggagacccaggccccagtggcccgtcc
ggaccccctggtcccatcggcagaccaggacctgcaggtaacgacggagagcccggaccc
agaggtatccagggtaactttggtcagaagggtgacgacggcccacgtggtttcccagga
ccacccggtcccctcggtctacagggcatgcccggtcccccgggcatcaagggcgaccaa
ggagatcccggtcctctgggcccacctggtcccgagggtccacgaggaaaccctggcccg
tctggtgctgatggtccccaaggcccacctggaaagcgaggacagcctggccgacctgga
gagaagggtgaacctggagatcccggccagcctggtctgcctggtgatgctggtggtcct
ggcgctaagggagaccctggtcctaagggagaggatggttcatctggcatgcctggtcct
tctggcaaacccggacccagaggagaggacggccccaagggagatcctggccctattggt
gcacccggtgaccctggtcctgttggcatccctggaccccctggtcaagatggcgagtct
ggtgtgaagggtgatcgaggcgaccgcggacagcagggccgacccggtccgtcaggagaa
caaggtccgcccggtcctcccggtaagcagggcgtgcctggtctgcccggactggagggg
ccttctgggatatctggggacaagggagacagcggtgagacaggaccccctggacaggct
ggaccagtcgggcctccgggtcctcctggcaagtctggaccggaaggcctccgcggcatc
cctggacctcctggccaacaaggaccccctggaccatccggcgaccctggcccccctggc
atcccgggatcacgaggtgtgtctggtctgaagggagaccctggacccaagggagaaaag
ggccaccctggactgattggtctcaccggcccgatcggtcctccgggagagaagggagag
agaggcctgcctggcttggatggaccaattggacctaagggagactccggaaacgacggc
cctcgtggagggccaggagagcagggaacaacaggccttcctggaggtcgcggaatcaag
ggatcaaagggatatatgggaccagcaggacccaagggagaagttggagcaccaggacca
cctggacctcctggcccaccaggaggagagagaacaccactacctctaaacatccagaag
aagaccaagagagacgtgtcggacgatgacgacctggaaggctaccagggaggagaggga
gacggcatcagcttcctggactacgaggcagggatggaggagatcttcggctcactcaac
tccctcaagatcgagatcgagcagatgaaggcaccactgggcacacgggacaatccagcc
agaacatgcaaagacttgtacatgtgtcacaagaccttcccagatggtatgtactggatt
gatcctaaccagggctgctctaaggacgccatccaggtgttctgtaacctcacagcggga
ggagagacgtgtgtggagccagacgagatgcgcaaatcgcatcgaatggcaacgtggaaa
gacgaaaatccaaaggattggttcagcgactacataagagggttccccatctcctacaca
agggtgggtgttgtacagttgaccttcttgaggcttctgcacgccaaggcaacgcagaac
ttcacctactattgttccaactccatcgcgtggtacgactcgaagactggccgccacagc
aaggccatcatgctgcaaggcaacaacgatatcgaatacgcgtgggacagcaaaaccaag
cccaatgtaatttctgatggctgcaaagaccgggaatacggcaagacagttttcgaaatc
acaacagcgaaaatgtttgagctgccaattacagacttaaaggttgtggacatcggaaag
gcagaccagaggttcggcttcgaagtgggacccatatgtttcagctaa
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integrated database retrieval system
