Branchiostoma floridae (Florida lancelet): 118421785
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Entry
118421785 CDS
T01074
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118421785
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118421785
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118421785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
118421785
NCBI-ProteinID:
XP_035685180
UniProt:
A0A9J7LQ89
LinkDB
All DBs
Position
8:13689723..13728190
Genome browser
AA seq
1512 aa
AA seq
DB search
MAWLKRWIILVFYGSIQQLMIFDDPLVGAVQCSVFSQNCKQNPTLSQNELDIETTNNRIS
GSTERRPRKKTKVKADYNFISGASAAQRLPAANSKLSSLILKNITAQGQSEPGLTYSAAQ
QAGHDVKSNLVIKEIGEIVGDPVGSESPGWELQQNYTLDSNTTSGDAPDGALYSLLNQTT
RNLITRTRNGTASQPGSIPSVTFETNPGVEEGVGVFEEGEPTDGRVSIVEEQVAPPSFPA
GQVDLDPGNGDSVLLVGEGEGVLSVGSFPAGEVPVVDETVVSAVEVGSNGSVIESSIPFT
PGEVAQPQSPSVVTGGASSEPVDIDGGFRILQNGTIVGYGYVEPNGFLLEPNGSRAIGPD
GNPISIPYEGPDGNPISVPIAGPDGRPIRPEEYPMVIGPDGGPVLGPDGFPLINPVEPSD
PLGPDGYPVPVGPDASLVGPDGYPLYPPTQVGVPPVVPNFHEGMPAPGAHGYGGREIPPG
FVAPGPGAGPRIPPGAGPGMTREEYIALLEGSWVPGPRGMPGEPGPQGLRGVRGPRGQRG
RQGERGPPGPPGEQGMMGAAGIMGRPGRKGPAGKRGIPGEPGERGQEGKDGDRGNMGLPG
MPGNQGFNGKPGRPGMTGPPGLKGDKGDPGMDGPMGPPGEPGDQGERGPWGPEGPPGVAG
QQGLPGPAGPGGPRGHTGSPGKDGKKGPKGDKGPAGLQGIRGRTGAQGGPGRSGPRGIIG
KAGIPGHPGLKGDQGERGPEGPIGHRGPAGKIGQKGASGRPGKNGKPGDPGFMGFPGFKG
NAGPKGDKGAIGPDGKPGPPGYEGEVGEAGLTGAHGEIGLKGDPGQQGTPGIPGNVGRPG
AKGKEGGRGPRGPRGLPGKKGSDGMMGHEGRPGPRGPPGPRGGEGGPGLPGPKGQQGPPG
PPGEGGLKGEPGERGDDGPEGQVGGVGPHGKDGKYGPRGPPGPVGFPGRLGPPGLPGPRG
PIGIPGWPGEIGKMGPQGPTGRTGPKGKHGRIGQGGLPGPRGVPGWPGLPGPTGERGEPG
LDGLPGSAGPRGVEGAQGPPGKPGPDGVPGIPGDQGNAGLEGPAGEKGKLGPQGPQGLKG
DVGDPGDYGPPGAPGRVGQQGLYGAPGPVGYPGKKGETGLVGVAGPPGAAGERGSEGDPG
KPGPPGPKGSPGPDGPQGPPGQQGDPGIYGMVGEDGPRGPDGERGPPGIAGIPGVDGELG
EPGEEGSRGPRGPEGDQGKPGEPGPFGEPGPEGYKGRQGQPGSPGEPGDPGMVGEEGPPG
PPGPPGAHGSQGDPGMTGPPGKPGPEGSAGQDGQRGPPGPRGDPGESGDTGLPGAIGVNG
NPGPPGPAGSPGKTGPAGEKGPPGLKGDPGPRGKTGEIGVQGPAGTPGMKGEDGFPGTQG
SPGPPGGKGEVGPEGPQGKKGLLGAPGPRGTQGPIGPKGLRGNPGLPGADGSKGSFGKSG
SKGDQGLMGLTGPIGPPGQRGPDGRRGDIGRSGFPGEPGDTGPIGPPGLTGKLGRKGEIG
PRMASLQCTMYI
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atggcgtggttgaagcggtggataattctggttttctatggctccatacagcagctgatg
atttttgacgaccccctcgtcggagctgtccagtgttcagtcttctcccagaactgcaaa
cagaatcctacgctgtctcaaaatgaactggatatagaaacaacaaacaacagaatatct
ggtagcacagaaagaagacccagaaaaaagacaaaggtgaaagctgactacaattttatc
tcaggtgcttctgctgcccaaagattgccagctgctaactccaagctctcatccctcata
ctgaaaaatatcacggcccaggggcagtccgagccaggcttaacgtacagcgcagctcaa
caagccggacatgatgtgaagtcaaatcttgtaataaaagagataggagaaattgttgga
gacccagttggatctgagtccccaggatgggagcttcagcagaactacacactggattca
aacacgacgtcaggtgacgcccccgatggagcgctctacagccttctaaaccaaacaaca
cgaaacttaatcacaaggactcgcaacggtaccgcgagccaaccaggtagtattccgtct
gttacctttgaaactaaccctggcgtagaggagggagtaggtgtgtttgaagaaggggag
ccgacagacggtcgcgtctcaattgtcgaggagcaagtagcaccgcctagctttccagcc
ggccaggttgacttggatcctgggaatggagacagtgttctcttggttggagagggagag
ggtgttctatcggttggcagtttcccagctggcgaggtaccagtagttgatgagaccgtt
gtatctgctgtagaagtaggatcaaatggcagtgtcatagagagcagtattccctttact
ccaggtgaggtagcgcagccgcagtctccttcagttgtcacgggcggcgcctccagcgaa
ccggtggacatcgacggcggattcagaatcttacagaacggaaccattgtcggatacggt
tacgtagaacccaatggttttctgttggagccgaacggaagccgagccatcggaccagac
gggaaccccatctcaataccatacgaaggaccagacgggaatcccatttccgtaccaatc
gcaggcccagacggaaggcccatcagaccagaggagtatccgatggtcatcggaccggat
ggaggcccggttcttggtccggatggtttccctctcataaatccagtagaaccatcagat
ccactaggtccagatggatatccagttcccgttggaccggacgcctctttggttggtccg
gacggttatcctttataccccccgacacaggttggcgttccccccgtggttcctaacttt
cacgaaggcatgcccgctcccggcgctcatgggtacggaggcagagaaatcccaccaggg
tttgtggcaccaggcccaggagcagggcccaggatcccgcctggagcagggccagggatg
accagggaagagtacattgcactgttggagggaagctgggtaccgggaccaagggggatg
ccaggagaaccaggaccacaagggctgagaggagtcaggggtcctcgaggacagcgtggc
aggcagggagaaaggggaccgcctggacctccgggcgaacagggtatgatgggtgctgct
ggcatcatgggaagaccaggaaggaaaggacctgctggcaagcgtgggatacctggcgaa
ccgggagaaagagggcaagagggtaaggatggggaccgtggaaacatgggactgcctgga
atgccagggaaccagggttttaatggaaagccagggagaccaggaatgacagggcctcct
gggctcaagggggacaaaggtgacccagggatggatggaccaatggggccaccgggtgag
ccaggtgatcagggggaaagaggaccatggggaccagaaggacctccaggtgtcgctggc
caacaaggtttaccaggtccagctggaccggggggtccaagagggcatactggatcacct
ggcaaagatgggaagaaaggaccaaagggagacaaaggtcctgctggtctacaaggcatt
cgaggaagaacaggtgcacaaggagggccggggaggagtggaccaagaggcatcataggc
aaggcgggtattcctggacatcccggtctaaaaggagaccaaggagaaagaggaccagag
gggccaattggacatagaggccctgcaggcaaaattggacaaaagggagcttcaggaaga
ccaggcaagaacggaaagccgggagatccaggctttatgggctttccaggcttcaagggc
aatgctggcccaaagggagacaagggagccataggacccgatgggaagcctggccctcca
ggctatgagggagaagttggggaggcaggcctgactggtgctcacggagagatcggtctg
aagggagatcccggtcaacaaggaacaccgggtattccagggaacgttggtaggccaggc
gcaaagggtaaagaaggtggtagaggaccccgtggacccagaggtctcccaggaaagaag
gggtcagatggcatgatgggacatgaaggtcgtcctggtccaaggggccctcctggaccc
aggggaggtgagggaggaccagggctgcctggtccaaagggtcaacaaggaccccctggc
ccacctggagagggaggactgaagggagagccaggagaaagaggagatgatggccctgag
ggtcaggttggaggcgttggtccacatggtaaagatggcaagtatggtccaagaggaccc
ccagggcctgtgggctttcctggtagattgggccctccaggtctaccagggccaagggga
cctattggtattccaggctggccaggggagatcggcaagatgggaccacaaggtcctact
gggcgcaccggaccaaagggtaaacatggaagaataggacaaggaggcttaccaggtcct
agaggcgttccaggatggcctggtctccctggtcctacaggagagagaggggaacctgga
ctggatgggcttcctggatcagcaggcccaagaggagtagaaggtgcacaaggaccccct
ggtaaacctggacctgatggtgttccaggtataccaggtgaccaaggaaatgctggacta
gagggacctgcaggagagaaggggaagctcggtcctcaaggcccacagggcttaaaggga
gacgtgggagacccaggcgactatggccccccaggtgcaccaggaagagttggacaacag
ggattgtatggggctcctggtcctgttggatacccagggaagaaaggagaaacgggtctt
gtcggtgttgcgggaccaccaggggctgcaggggagagaggctcagaaggtgatcctggc
aaacctggtcccccgggacctaaaggcagtccagggccagacggtccccaaggcccacct
ggacagcagggagaccctggcatatacggcatggtgggagaagatggaccaaggggacca
gatggggaaagaggtcctcctggaatagctggaattcctggagttgatggtgagcttgga
gagccaggggaagaaggctcaaggggtcccaggggtcctgagggagaccagggcaagcca
ggagaaccaggaccatttggtgaaccaggtccagagggatacaagggtagacaagggcaa
cctggatctccaggagaaccaggggatccgggcatggttggagaggaggggccacctgga
ccaccgggacccccaggagcgcatggttctcagggtgatccgggcatgacaggaccaccg
ggaaaaccagggcctgaagggtcagctggccaagatggacagagaggaccaccgggtcca
agaggagatcccggggagtcaggtgacacaggactaccaggagccatcggggtgaacgga
aacccaggaccacctggacccgcgggatcacccggaaaaactggaccagcaggtgagaag
ggcccacctggactgaaaggagacccaggacctagaggcaagactggtgagattggtgtg
caaggaccagcgggcacgccagggatgaagggtgaagatggatttcctggcacacagggg
tcacctgggccacctggtggaaagggagaggttggaccagagggaccacaaggcaagaag
ggactactgggagctcctggcccacgtggaactcaaggaccgatcggacccaaaggactg
cgaggaaatcctggtctccctggagcagatggttcaaaaggatcatttgggaagtctggt
tcaaagggagatcaaggattgatgggcctcactggaccaattggaccacctggacaaagg
ggtccagatggaaggagaggggacatcggtcgatctggttttcctggagagcctggagat
actggccctataggacccccaggattaacaggaaaactgggcagaaagggagaaattggg
ccaaggatggcttcacttcaatgtacaatgtacatctaa
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integrated database retrieval system
