Branchiostoma floridae (Florida lancelet): 118424173
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Entry
118424173 CDS
T01074
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118424173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118424173
Spliceosome [BR:
bfo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118424173
Complex C
U5 SnRNP specific factors
118424173
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
Septin
Motif
Other DBs
NCBI-GeneID:
118424173
NCBI-ProteinID:
XP_035688604
UniProt:
A0A9J7LUW4
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Position
10:3864995..3890080
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AA seq
978 aa
AA seq
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MDTELYDEFGNYIGPQLDSDDESEEEEEEEETEHIRRVQDYGEDEDDADEAMDQDVEPSM
AVVLHEDKKYYPSAEEVYGADVETIVHEEDTQPLTEPIIKPVKRNKFAHIEQELPLTSYN
MEYLADLMDNPELIRNVVLAGHLHHGKTTFVDCLMEQTHPDIFTKEERQLRYTDTLFTEQ
ERGVSIKSQPVTLVLPDSRGKSYLINVMDSPGHVNFSDEATAGYRLSDGVVLFVDAAEGV
MLNTERLLKHAVQERLAITVCINKIDRLMLELKLPPTDAYYKLRQIVDEINGLLSVYSEE
SEPVVVSPLMGNVCFASSQYRFCFTLQSFSKIYEDTYGGFSAKELSRRLWGDIYFNSKSR
KFTKKPPMSTSQRSFVEFILEPLYKIFAQVVGDVDSTLPRALEELGVHLTKEEMKMNIRP
LLKLICRRFFGDFTGFVDMCAEHIKSPYAAARTKVEHTYTGPLENELGDAMLECDPEGPL
MLHTTKMYSTEDATQFLVFGRVMSGTIHANQDIRVLGESYTLDDEEDSRLVTCGRLWISE
ARYKVEVNRVPAGNWVLIEGVDQPIVKTSTITEARGNDEAYIFRSLKFNTSSVIKIAVEP
VNPSELPKMLDGLRKVNKSYPLLTTKVEESGEHVIMGTGELYLDCVMHDLRKMYSEIDIK
VADPVVAFCETVVETSSLKCFAETPNKRNKITMIAEPLEKGLAEDIENEVVRITWNRKRL
GEFFQTKYDWDLLAARSIWAFGPDNTGPNILVDDTLPSEVDKGLLNSVKDSIVQGFQWGT
REGPLCDEPIRNVKFKILDAVIAGEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFV
EAQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQ
AFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFD
DPMLLELARQDVMLNYPM
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggatacagaactgtatgatgagtttgggaactacattggtccccagttggacagtgat
gatgagtcagaggaggaggaggaggaggaggagacagagcacatcaggagggtccaggac
tatggagaggatgaagatgatgcagatgaagcgatggaccaggatgttgaaccctccatg
gctgtggttctacacgaagacaagaaatactaccctagtgcagaggaggtatacggggca
gatgtggagaccattgttcatgaagaagatactcaacctttgacagaaccgatcatcaaa
ccggtgaagagaaacaagtttgcacatattgaacaggagctgcccctgaccagctacaac
atggagtacctggcagatttgatggacaaccctgagctgatcaggaacgtggttctagct
gggcatcttcatcatggcaagacaacttttgtggactgtctcatggaacaaacccatcca
gatatcttcactaaagaggaaagacagctgcggtacactgacacactattcacagaacag
gagagaggagtaagtattaagagccagccggtgacgctggtacttccggactcccgtggg
aaatcctacctcatcaacgtcatggattctccaggacatgtgaacttttcagacgaggca
acagcggggtaccgcctgagtgacggtgtcgtactgtttgtggatgcagcagagggggtg
atgttaaatacagaacgtctactaaaacacgcagtacaggagagactggccatcaccgtg
tgtatcaacaagattgacaggctgatgctggagctgaaactgccgcccaccgacgcctac
tacaaacttcgacagatcgtggacgagatcaacggtcttctgagtgtgtactctgaggag
agtgagccagtagtggtgtctccactgatggggaacgtgtgctttgccagctcccagtac
cgcttctgtttcaccctacagtccttctccaagatatatgaggacacatacggaggtttc
agtgcaaaggaactgtcacgaaggttgtggggagacatctactttaactcaaagagtcgc
aagtttaccaagaagccaccaatgagcacatcccagcgcagctttgtggagttcattctg
gagccgctgtacaagatttttgcacaggttgtaggagatgtggactccaccctcccccgt
gcccttgaggagctgggtgtccacctgactaaggaggaaatgaagatgaacatcagacca
ctgctcaaactcatctgcagaagattctttggagacttcacaggttttgttgacatgtgt
gcagaacacatcaagtccccgtacgcagctgctcgtaccaaagtggagcacacctacacg
ggaccgctggagaatgaactgggagacgccatgttggaatgtgaccctgagggcccgctg
atgttacacaccaccaagatgtactccacagaggatgccacacagttcctggtgttcggg
cgcgtcatgagcggaaccatccatgctaaccaggacatccgcgtgctgggggagagctat
acactggacgatgaagaagactccagactggtgacctgcgggaggctctggatctcagag
gccaggtacaaggttgaggtgaacagggtgcctgctgggaactgggtcctgatcgagggc
gtcgaccagcccatcgtcaagacgtccaccatcactgaggccagggggaacgatgaggcg
tacatttttcgatccctgaagttcaacaccagctcggtcatcaagatcgcggtggaacca
gtcaacccctcagagctgccgaagatgttggacggactcaggaaagtcaacaagagctac
cctctcctcacaacaaaggttgaggagtcaggtgaacatgtgatcatgggtacaggagag
ctgtatctggactgtgtcatgcacgacctcaggaagatgtactctgaaatagacatcaag
gtagcagacccagttgtggccttctgtgagactgttgtcgagacgtcatcactgaagtgc
tttgcagagacaccaaacaagaggaacaagatcaccatgatcgctgagccgctggagaaa
ggtctcgcggaggacatcgaaaacgaggttgtacggatcacctggaatcgtaagaggctg
ggagagttcttccagaccaagtacgactgggatctgctggctgcccggtccatctgggcc
ttcggaccggacaacactggacccaacatcctggtggacgatacgctgccgtcagaggtg
gacaaaggactgctgaactcggtcaaggacagtattgtacaggggttccagtggggtacc
agggaaggcccactgtgcgacgagccaatcagaaacgtcaagttcaaaatcctggatgcc
gtcatcgccggggagcccctccaccgcggcggcgggcagatcatcccgaccgctcgacgt
gtcgcgtactctgccttccttatggcgacccctcggctgatggaaccgtacttgttcgtg
gaggctcaggcgcccgctgactgcgtatccgcagtgtacacggtattggcccggcgaaga
ggtcacgtgacccaggatgcaccaatcccaggctcccctctgtacaccatcaaggcattc
attcccgccattgattcctttgggttcgagacggacctgcggacacacacacagggtcag
gccttctgtctgtccgtcttccaccattggcagattgtgccaggtgaccccctggacaag
agtattgtgatccggcctctggaaccacaacctgccacacacctggctcgggagttcatg
atcaagactcgacgcagaaagggtctgagtgaggatgtcagtatcaacaagttcttcgac
gaccctatgttgttggagttggccagacaagacgtcatgctgaactaccccatgtag
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