KEGG   Branchiostoma floridae (Florida lancelet): 118428549
Entry
118428549         CDS       T01074                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bfo  Branchiostoma floridae (Florida lancelet)
Pathway
bfo03030  DNA replication
bfo03410  Base excision repair
bfo03420  Nucleotide excision repair
bfo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118428549
   03410 Base excision repair
    118428549
   03420 Nucleotide excision repair
    118428549
   03430 Mismatch repair
    118428549
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bfo03032]
    118428549
   03400 DNA repair and recombination proteins [BR:bfo03400]
    118428549
Enzymes [BR:bfo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     118428549
    6.5.1.6  DNA ligase (ATP or NAD+)
     118428549
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     118428549
DNA replication proteins [BR:bfo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    118428549
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     118428549
DNA repair and recombination proteins [BR:bfo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     118428549
   NER (nucleotide excision repair)
    Other NER factors
     118428549
   MMR (mismatch excision repair)
    Other MMR factors
     118428549
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C PGM1_C
Other DBs
NCBI-GeneID: 118428549
NCBI-ProteinID: XP_035694536
UniProt: A0A9J7N7X2
LinkDB
Position
13:complement(15492525..15506430)
AA seq 1017 aa
MAQRSISSFFAPRAKTPKQDTAATGHKSPLKTKNGSPPASAPGDDSPVKSLPRKKKARRI
IDSDDDDEDGEENVAMETEPSKSADEQKEAKDVEKTPKEVEKVKDESEDVPSPKMPRVTY
NGPNLQSPGGIPKRKTARKQLPTPKRKLVEIKSPKSNGHTSPTAEEEESSAKKVKTEKKE
EKEEKTEEKMEKDSPDEEVKEKVKDDEEVVQQSKKKNSPKPKKEKKSPKSVEKKKKIKEE
PKEKEKESAGPSEDSMDSLFAAVIKKAGEVTAEEEMEETEEGKEKPTEDVKSPSNKKAVK
KEEDSSKKPSSGISSFFSPKRSSQPSDESSEKKPSPKPAAKPMAAFFKPKQEAEKTAGQS
GLTAEDYNPTKAHYHPVEDACWAKDKTVPYLALAKTFEAIEEVRARLKITEILCNFFRSV
IALTPDDLVQCVYLCLNKVGPAYEGLELGIGETVLMKAIAEATGRKMAQIKTDAQEKGDL
GIVAETSRSTQRTMFAPPKLTVRGVFNKLKEISTIKGNDVMTKKINFIKGMFVACRQSEA
RYLIRSLGGKLRIGLAEQSVLTALAHAATLTPAGKDVLDAGKGKSSDALKKKLEDAALIL
KTTYCEMPNYDAVISAMLKHGLEELPKHCKLTPGTPLKPMLAHPTKGVSEVLRRFEGAEF
TCEYKYDGERAQIHMLENGEIHIYSRNQENNTSKYPDIIERMPKVNHDDVTSCIIDSEAV
AWDPENKKILPFQVLSTRKRKDADKSEIKVQVCVYAFDLLYLNGQSLVREPFRKRREMLR
ESFNEVEGEFVFATSMVSGNTEEIAEFLDASIKDSCEGLMVKTLDKDATYEIAKRSHNWL
KLKKDYLDGVGDTLDVVPIGGFLGTGKRTGKYGGFLLACYNEEDEEFQSICKIGTGFKDE
ELEQHTEFFKNHVVDKPKSYYRYDSSVEPDHWFDAVQVWEIKCADLSISPVHKAAEGIVD
PEKGISLRFPRFLRIRDDKKPEEATSAQQVAEMYRNQDQVKNQQSNEKSDPADDDFY
NT seq 3054 nt   +upstreamnt  +downstreamnt
atggctcagcgatctatctcgtcgtttttcgcgcccagagccaagactccgaaacaggac
acagcagcgactggacataagtcaccactcaagacaaagaatggctcccctccggcctcc
gcaccaggggatgactccccagtcaagtccctgccgcgtaaaaaaaaggcgcggcgcatc
atcgacagtgatgatgatgatgaagatggggaagagaacgttgccatggaaacagaacca
agtaaatcagctgatgaacagaaggaagcaaaggatgttgagaagacccccaaggaagtg
gagaaggtgaaagatgagagtgaggatgttccgtctcccaagatgccgagggtcacgtac
aacggacccaacctgcagtctccggggggcatccctaagagaaagactgctcgcaagcaa
ctccccactccgaagcgcaagcttgttgagataaagagcccaaagtccaacgggcacaca
tcgcccactgctgaagaggaggagtccagcgccaagaaagtgaagacagaaaaaaaggaa
gagaaagaagaaaagacagaagaaaagatggagaaggattcccctgatgaggaagtgaag
gaaaaagtgaaggatgatgaagaagttgtgcaacaaagcaagaagaagaacagcccaaag
cctaagaaagagaagaagagtccaaagtctgtggaaaagaagaagaagataaaggaggaa
cctaaggagaaagaaaaggagtccgctggtccatctgaagactccatggattccctgttt
gctgcggttattaagaaggcaggagaagtaactgctgaagaagagatggaagaaacagag
gaaggcaaagaaaagcccactgaagacgtgaagtcaccctcaaacaagaaagcagtgaag
aaggaggaagacagcagcaagaaacccagctcaggaatcagctccttcttctcccccaag
agatcttcccagccttcagatgagtccagtgagaagaagccgtccccaaaacctgctgcc
aagcccatggctgccttcttcaaacctaaacaggaggctgagaaaactgctggccagtca
gggctgacagctgaggactacaaccccaccaaggcccactatcaccctgtggaggatgcc
tgttgggctaaggacaagacggttccataccttgccttggccaagacgtttgaagccatt
gaagaagttcgagccaggttgaagattacagagatcctttgtaactttttccgttcggtg
atcgcgctgaccccagatgacctggtgcagtgcgtgtacctgtgcctgaacaaggtcggg
cccgcgtacgagggtctggagctcgggatcggggagaccgtgctgatgaaggccatcgcc
gaggcaacgggcaggaagatggcgcagatcaaaacggacgctcaggagaaaggagacttg
ggaatagtggctgagaccagtcgcagcacacagcgcaccatgttcgctccacccaagctg
acagttcgaggggtcttcaacaagctcaaggagatttccaccatcaagggaaatgatgtc
atgacaaagaagataaacttcatcaaaggcatgtttgttgcgtgtcggcagtcagaggcg
cggtaccttatccggtcgctagggggcaagttgaggatcgggctcgctgagcagtccgtt
ctcacagcactggcccatgcagcaactcttactccagctgggaaagatgtgcttgatgca
gggaagggaaagtcttcagatgcactgaagaagaagttagaggatgctgcactcatactc
aagactacgtactgtgagatgccgaactacgatgccgtcatctctgccatgctgaagcac
gggttggaagagctgcccaaacactgcaagctgacgcccggcacccccctcaagcccatg
ttggcgcatcccaccaagggcgtcagcgaggtgctgcgcaggtttgagggggcagagttc
acctgcgagtacaagtatgatggcgagagggcgcagatccacatgcttgaaaacggagag
atccacatctacagcagaaaccaggaaaacaacacctccaagtacccagacatcattgaa
cgcatgccaaaggtcaaccacgatgatgtcacttcctgtatcattgactccgaggcggtt
gcctgggaccctgagaacaagaagatcctgccattccaggtgctgagtaccaggaaaagg
aaggatgcagacaagtcggaaattaaggttcaggtgtgcgtgtacgccttcgacctgctg
tacctcaatggtcagtccctggtaagggagccattccgcaaacgtcgggagatgctgaga
gagtcgttcaatgaggtggagggagagtttgtgttcgccacgtccatggtgtcaggaaac
acggaggagatcgctgagttcctggatgcttccatcaaagatagctgtgagggtctgatg
gtgaagactcttgacaaggatgccacctatgagattgccaagagatcgcataactggctc
aagttgaagaaggactacctggatggagtgggagacacgctggatgtggtgccgatcgga
ggcttcctgggtacagggaagaggacagggaagtatggaggcttcctattggcctgttac
aacgaagaggatgaagaattccagtctatctgcaagatcggtacgggcttcaaagatgaa
gaacttgaacagcatacagagttcttcaagaaccatgttgttgacaagcccaagtcatac
tatcgctatgacagcagtgttgagccagaccactggtttgatgcagttcaggtgtgggag
atcaagtgtgcagatctgtccatctcacccgtgcacaaggctgctgagggcatcgttgac
ccagagaaggggatctcgctacgtttcccacgattcctgcgtatccgtgacgacaagaag
ccagaagaggcaacaagtgcacagcaggttgcagagatgtaccgtaaccaggaccaggtg
aagaaccaacagtccaatgagaaatctgacccagccgacgacgacttctactga

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