Botrytis cinerea (Gray mold): BCIN_03g04080
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Entry
BCIN_03g04080 CDS
T01072
Symbol
Bcysh1
Name
(RefSeq) Bcysh1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bfu
Botrytis cinerea (Gray mold)
Pathway
bfu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
BCIN_03g04080 (Bcysh1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfu03021
]
BCIN_03g04080 (Bcysh1)
03019 Messenger RNA biogenesis [BR:
bfu03019
]
BCIN_03g04080 (Bcysh1)
Transcription machinery [BR:
bfu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
BCIN_03g04080 (Bcysh1)
Messenger RNA biogenesis [BR:
bfu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
BCIN_03g04080 (Bcysh1)
U7-dependent histone pre-mRNA processing factors
BCIN_03g04080 (Bcysh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Lactamase_B_3
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
5441218
NCBI-ProteinID:
XP_001560625
UniProt:
A0A384JC57
LinkDB
All DBs
Position
3:join(1361656..1361805,1361867..1361964,1362330..1363461,1363521..1364172,1364265..1364719)
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AA seq
828 aa
AA seq
DB search
MASKRKAAAMAPTVEEPVDPADELTFTNLGGGNEVGRSCHIIQYKGKTVMLDAGMHAGYD
GLAALPFYDDFDLSTVDLLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLII
DSVRVGGASSGGGSQPVYTEADHLTTFAQIEAIDYHTTHTISSIRVTPYPAGHVLGAAMF
LIEIAGLKIFFTGDYSREDDRHLVSAEVPKGVKIDVLITESTYGIASHIPRLEREQALMK
SVTSILNRGGRVLMPVFALGRAQELLLILDEYWGKHPEFQKIPIYYASNLARKCMLVYQT
YVGSMNENIKRLFRERMAEAEANSTSGGRGGPWDFKYIRSLKNLDRFDDVGGCVILASPG
MLQNGISRQLLERWAPSDKNGVIITGYSVEGTMAKQIMQEPDHIQAIMSGPQGFTRRSAP
GETEKAMIPRRCSVQEYSFAAHVDGVENREFIEEIAAPVVILVHGEQHNMMRLKSKLLSL
NADKTTKVKVFSPKNCEPLRIPFMTSKTAKVVGKLANNPPPTDSAQLITGVLVQNDFKMS
LMAPEDLREYAGLTTTTITCKQRMTLSAAGIDLIRWALEGTFGKIDELPESRGQQKHSNE
NGNGDTHMNGSSAEEADEEIANTNAVTAYLVMGCVTVRYRSNGEVELEWEGNMLNDGIAD
AIMAVLYSVESSPAAVKQSASKSPHSHSHSPPARNLHAHLTPTERLERLFMFLEAQFGAD
NLVPITTPRLSTGIPSPSSSPSISSDIKPSSPSDPETSESSETYAQEKELARLHKLGIPV
PGIEIKVDKMVAKVWLEDLDVECANRVFGERVRAVVERAVEVTAPLWG
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaacgtaaggctgcagccatggcacctacggtggaagaaccagtagatcca
gcggatgaactcacttttacgaatcttggtggtggtaatgaggtcggaagatcttgtcat
ataattcaatacaagggcaagactgtcatgctcgatgcaggtatgcatgctggctacgac
gggctagcagctctacctttctatgacgattttgatttaagtactgtcgatttacttttg
atcagccatttccacgtcgaccacgcagcttcgttaccatatgttcttgcgaagaccaac
ttcaagggtcgtgttttcatgacacatcccaccaaggctatctacaaatggctcattata
gacagcgtaagggttggaggggcatcatcaggaggaggttcacaaccagtctataccgaa
gccgaccatctcactacgtttgctcaaatcgaagctatagattatcataccacacacaca
atctcttcgatcagggttacaccatatccagcagggcatgtactcggtgctgctatgttc
cttattgagatcgcaggactcaagatatttttcacgggagattattctcgagaagatgat
agacatcttgtctctgccgaggttcccaaaggagtgaagattgatgttctaattaccgaa
tctacgtatggtattgcatcacatattccccggttagaacgagaacaggcccttatgaag
tctgtcactagtattctgaatcgtgggggccgagttctcatgccggtttttgcgcttggt
agagctcaagaacttcttttgattctagatgagtattggggtaaacatccggaattccaa
aaaatccccatctactatgctagtaacttggctcgtaaatgtatgttggtataccaaaca
tacgttggctctatgaacgaaaatatcaaacgactcttcagagaacgtatggccgaagct
gaagccaactcaactagtgggggtagaggaggaccatgggatttcaaatatatccgttcg
ttaaagaaccttgatcgatttgacgatgttggaggttgtgttattttagcaagtcccggt
atgctacagaatggtatcagtagacaattactagaacgatgggcaccaagtgataaaaat
ggtgttatcattactggttacagtgtcgaaggtactatggcaaagcaaatcatgcaagaa
ccagatcacatccaagcaattatgtctggtccacagggcttcacacgaagatctgcaccg
ggagaaacagagaaagccatgatacctagaagatgtagcgttcaagagtactcctttgca
gcgcacgttgatggcgtcgagaaccgggaattcatcgaagaaatcgctgctcctgtcgtg
attctcgtccacggcgaacaacacaacatgatgcgtctaaaatccaaacttctctccctc
aacgccgacaaaacaaccaaagtgaaagtcttctctcccaaaaattgcgaaccattacgc
atcccctttatgacttccaaaaccgccaaagtcgtcggaaaactcgccaacaatcctcca
cctactgattctgcccaacttatcactggtgtactagttcaaaacgatttcaaaatgtca
ctgatggctcccgaagatttaagagaatatgctggattaactactactactattacgtgt
aaacagcgtatgacacttagtgcggcgggtattgatcttataagatgggcgctagaagga
acatttggaaagattgatgaattgcctgaaagtagaggacaacagaaacattcaaatgag
aatggaaatggggatacgcatatgaatggatcatctgccgaggaagccgacgaggaaatc
gcaaatacgaatgcagtgactgcatatttagtcatgggctgtgtaacagtgaggtataga
agcaatggagaagtagaattagaatgggagggcaacatgttgaatgatgggattgcggat
gccatcatggcggtgttatattcggtggaaagtagtccagctgctgttaaacaatctgca
agcaaatccccccactcacactctcactccccaccagcccgcaacctgcacgcgcaccta
acccccaccgaacgtctcgaacgcctcttcatgtttctggaagcccagttcggcgccgac
aatctcgtccccataaccactccccgtctatccaccggaattccatctccctcctcctcc
ccctctatatcctccgatatcaaaccttcttccccctccgatccggaaacctctgaatct
tcagaaacgtacgcccaggaaaaagaactcgctcgtcttcataaactcggtattcccgtc
ccgggtatcgaaatcaaggtcgataagatggtggcgaaggtatggttggaggatttggat
gtcgagtgcgcgaatcgggtatttggggagagggtgagagctgtagtggagagggctgta
gaggttacagcgccattgtggggttga
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