Priestia flexa: BC359_19550
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Entry
BC359_19550 CDS
T04803
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bfx
Priestia flexa
Pathway
bfx03030
DNA replication
bfx03410
Base excision repair
bfx03420
Nucleotide excision repair
bfx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BC359_19550 (ligA)
03410 Base excision repair
BC359_19550 (ligA)
03420 Nucleotide excision repair
BC359_19550 (ligA)
03430 Mismatch repair
BC359_19550 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfx03032
]
BC359_19550 (ligA)
03400 DNA repair and recombination proteins [BR:
bfx03400
]
BC359_19550 (ligA)
Enzymes [BR:
bfx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BC359_19550 (ligA)
DNA replication proteins [BR:
bfx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BC359_19550 (ligA)
DNA repair and recombination proteins [BR:
bfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BC359_19550 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BC359_19550 (ligA)
MMR (mismatch excision repair)
DNA ligase
BC359_19550 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BC359_19550 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
5_3_exonuc
HHH_3
BRCT_2
DASH_Dad3
CTD11
Motif
Other DBs
NCBI-ProteinID:
AQX56271
LinkDB
All DBs
Position
complement(3826384..3828390)
Genome browser
AA seq
668 aa
AA seq
DB search
MDLETSKQRIQELHELLNRYNYEYHVLDQPTVPDAEYDRLMNELIKLEEAFPELKTQDSP
TQRVGGQVLDAFQKVEHRTPMLSLGNAFDEQDLRDFDRRIRQVVGDDFSYVCELKIDGLA
VSLLYEDGYLVRGATRGDGTIGEDITENLKTIRSIPLRVKDPVTMEVRGEAFMPRKSFEK
LNEAKIQNEELPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDAGEQEVEAHSESLD
LLDHLGFKTNKERQKCATIEEVLAYIENWQEKRPSLDYDIDGIVIKVDSFEQQSKLGTTA
KSPRWAIAYKFPAEEVVTTLKDIELTVGRTGVITPTAILEPVQVAGTTVQRASLHNEDLI
REKDIRIGDQVVIKKAGDIIPEVVNVITEKRTGEEQEFTMPTHCPECESELVRLEGEVAL
RCINPSCPAQIREGLIHFVSRNAMNIDGLGEKVITQLFKEELIKDVADLYELTKEQLIEL
ERMGEKSADNLLKAIEASKENSLERLLFGLGIRHVGAKAAKTLAQQFDTMDKLQKATYDE
LVTINEIGDKMADAIVTYFSQEEVQELLSELQEAGVNMTYKGPKPVNVEESDSVFAGKTI
VLTGKLEELGRSEAKAEIEALGGKVTGSVSKKTDLVIAGEDAGSKLAKANELGIEVWDEA
RLLIELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcttgaaacgagcaaacaaagaattcaagagttgcatgagcttttaaatcgctat
aactatgagtatcatgtattagatcagccaacagttccggatgcggaatacgaccgctta
atgaacgagctgattaaattagaagaagcatttccggagttgaaaacgcaagattctcct
actcagcgcgttggcggccaggtgcttgatgcctttcaaaaggttgagcaccgcacgccg
atgctcagcttaggcaatgcgtttgatgagcaggatttgcgtgattttgatcgtcgtatt
cgccaagtcgtaggagatgatttttcctatgtatgcgagttgaaaatcgatggcttagca
gtctctttactttacgaggatggctacctagtacgtggagctacgcgtggagatgggaca
attggtgaagacatcaccgagaatctgaaaacaattcgttcaattcctcttcgtgtaaaa
gacccggtgacaatggaagtgcgcggagaagcattcatgccgagaaagtcatttgaaaaa
ttaaatgaagctaagattcaaaatgaagagcttccgtttgcaaaccctcgtaatgccgct
gctggttcactgcgtcagttagatcctaaaattgcagcaaagcgaaatcttgatattttt
gtgtatgcaatgacggatgcgggtgagcaggaagtagaagctcatagtgaaagcttagac
cttttagaccatcttggttttaaaacaaataaagagcgtcaaaaatgtgctaccattgaa
gaagttcttgcttacattgaaaactggcaggaaaaacgcccatctcttgattatgatatc
gatgggattgttattaaagtcgattcgtttgagcaacagagtaagcttggtacaacggca
aaaagtccgcgttgggcaatcgcttataagtttcctgcagaagaagttgtaacaactcta
aaagatatcgagctcacggttggacgtacaggtgttattacgccgacggccattttagaa
cccgtgcaggttgccggtacgaccgtgcagcgtgcatctttacacaatgaagacttgatt
cgtgaaaaagacattcgcatcggcgaccaagtagttattaagaaagcgggcgatattatt
ccggaagttgtgaatgtaattaccgaaaaacgaacgggtgaggaacaagagtttacgatg
ccaactcactgcccggaatgtgagagtgaacttgttcgcttggaaggagaagtagcgctt
cgctgtattaatccaagctgcccagctcaaattcgtgaagggctcattcactttgtgtct
cgcaatgcaatgaatattgatggtcttggtgagaaagtgattactcaactctttaaagaa
gagttaatcaaagacgtagcggatctttacgaactaacaaaagagcagctaattgagctt
gagcgaatgggtgagaaatcagcggataatctgttaaaagccattgaagcttctaaagag
aattctcttgaaaggttgctatttggtctaggcattcgtcacgttggtgccaaagcagca
aaaaccctagcacaacaatttgatacgatggacaagttgcaaaaagcaacgtatgatgag
ttagtgacaattaatgagatcggtgataagatggccgatgcaatcgttacatacttttca
caagaagaagtgcaagagctgttgagcgagcttcaagaagccggcgttaacatgacgtat
aaaggcccaaaaccagtcaatgtagaagagtctgattctgtttttgctggtaaaacgatt
gttttaactggtaaattagaagagttaggtagaagtgaagcaaaggcggagattgaagct
ttaggcggaaaagtaacaggtagtgtaagtaagaaaacagaccttgtcattgcgggggaa
gacgcaggttctaaacttgctaaagcaaatgagcttggcattgaagtgtgggacgaagcg
aggttacttattgaattaaacaaataa
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integrated database retrieval system
