Bufo gargarizans (Asiatic toad): 122930650
Help
Entry
122930650 CDS
T07965
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar04510
Focal adhesion
bgar04512
ECM-receptor interaction
bgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122930650 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122930650 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122930650 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bgar04147
]
122930650 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
bgar00536
]
122930650 (COL4A1)
Exosome [BR:
bgar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122930650 (COL4A1)
Glycosaminoglycan binding proteins [BR:
bgar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122930650 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122930650
NCBI-ProteinID:
XP_044140096
EnsemblRapid:
ENSBGGG00000019802
LinkDB
All DBs
Position
3:219581199..219788761
Genome browser
AA seq
1672 aa
AA seq
DB search
MARTTSWRLLALLFLLQELLSCCQAAACNGCGTSKCDCSGVKGNKGERGLPGLPGIIGFP
GLQGPEGPPGPLGQKGDTGEPGLPGTKGNRGPPGSAGFPGNPGLPGIPGQDGPPGPSGIP
GCNGTKGERGPLGPPGLPGLLGYPGPPGFPGIKGDPGEVFGMQGLMIKGDKGLPGIIGLP
GTPGLPGLEGPVGPPGLTGRTGPPGPPGPPGPKGSMGLSSNGPQGEKGEPGPPGPPGQQG
PASHGKGAVWYRDKGEKGMQGEKGDQGNTGEPGSSIKGEKGEPGKPGPRGKPGKDGERGE
NGQEGIPGRQGFDGIRGQDGQKGDKGDGGPPGPPGIVIQDGQQTVTGEKGDTGLPGYPGS
KGEKGAKGATGFQGNPGQPGLSVNGPPGAPGLTGESGEKGEPGFPGTSLPGQKGREGLRG
PPGFPGPPGPIDPTQECIPGQSGESGANGDPGQQGFPGERGQKGDKGDACPTCDTVPSAL
PGPPGPQGPPGTPGVPGLAGNKGDRGEPGYDGPPGAPGPHGVPGLMGRPGAKGSPGEVYF
EPQLKGDKGDPGFPGLQGTTGREGRPGRDGQPGQPGPKGVSAAVGAKGERGPPGDSGSPG
IPGQKGLQGHPASGPPGQPGERGEPGGPGFSGSPGNPGSKGEPGKLTVVAGPPGPIGSAG
FPGLPGEQGDKGAPGFSGRPGIPGEKGEPGVEGKGLPGPPGEKGHQGIEGARGVDGIPGQ
AGREGLRGEPGTPGAKGEPGLGLPGPKGLIGHPGPPGAIGEKGNTGTTGVPGEQGFPGVP
GHSGAKGDTGPAGAPGLRGNPGVPGFGPQGEPGPQGLPGSPGVPGPIGAKGSQGYPGFPG
ADMPGPKGDKGTSGMPGIMGMPGESGIQGLPGKDGSPGLQGQKGDMGFMGVPGIQGQPGS
PGNPGLPGEKGDPGPPGFRGQSGTEGSKGDKGERGLQGDPGTLPPMEHMKGEKGEQGARG
QTGIQGEKGTHGDLGSTGMPGKDGEQGMPGKPGSKGDKGIQGLPGGPGFPGQKGSMGEMG
VPGPSGPKGEHGIQGNPGLPGVTGIKGEKGFKGEEGVPGIGIPGPPGIKGDAGTDGLQGL
PGETGDKGDIGVPGMPGLQGEKGLPGLAGFPGSPGIPGEKGTKGFPGRDGVPGSKGQPGE
HGIQGPPGSIGEKGEPGYDGVPGTPGEKGETGLPGRAIPGYPGERGEKGGKGDAGLSGSP
GVPGFPGIKGDQGIPGNQGIQGPPGTPGLPGIAMEGPKGDRGQPGPQGFPGDPGPAGSPG
FPGQDGAKGERGDRGWPGAPGFQGVKGDPGFQGLPGDAGFPGQTGHKGERGPPGVSGFPG
LKGTEGPMGEKGQGGDRGESGPKGSQGLPGPAGQFQIFKGDTGPPGLPGPSGPKGFPGFP
GPKGEQGPVGAVGLPGPSGVAGINGIPGQKGELGPIGPTGPRGYQGPPGQDGLPGPMGLP
GQASMAHGFLITRHSQTIEVPQCPFGTVPVYDGYSLLYVQGNERAHGQDLGAAGSCLRKF
STMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPVTGENIQPFISRCSVCEAPAMI
MAVHSQTIQIPSCPNGWISLWIGYSFVMQTSAGAEGSGQALASPGSCLEEFRSVPFIECH
GRGTCNYYANTYSFWLATIERSEMFKKPTPSTLKAGDLRTHVSRCQVCMRQT
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggaccacgagctggaggctgctggcgctgctcttccttctacaggagctcctc
agctgctgccaggctgcggcatgtaatgggtgtggaactagcaaatgtgactgtagcgga
gtgaaaggaaataagggtgaacgaggattacctggtctgcctggcattattgggtttcct
gggcttcaaggaccagagggaccccctggaccattggggcagaaaggtgacacaggagaa
ccaggacttccaggcacaaaaggaaacagagggccccctggatctgctggatttccagga
aaccctggtctccctggcatacctggtcaagatggccctccaggcccatctggcattcca
ggctgcaatggtacaaagggtgaaagaggaccactgggtccacctggtcttccagggtta
ttaggttatccaggtcctccaggttttccaggaattaagggagatcccggagaggtcttc
ggtatgcaaggattaatgataaaaggagataaaggtttacctggaataattggtttacca
ggtacacctgggttgcctggtttagaaggcccagtaggtcctcccggtctaacaggacgt
actggaccacctggtccacctggtcctccgggaccaaagggctcaatggggctaagctcc
aatggaccacagggtgaaaagggtgaaccaggaccacctgggcctccgggtcaacaaggc
ccagcatctcatggaaaaggtgcagtttggtaccgagataagggagaaaaaggcatgcaa
ggtgaaaaaggtgaccaaggtaatacgggtgaacctggatccagtattaaaggtgaaaaa
ggagaacctggaaaaccaggtcccagaggtaaacctggaaaagatggtgaaaggggagaa
aacggacaggagggtatacctggtagacaaggatttgatggaattcgaggacaggatgga
cagaaaggtgataaaggtgacggtggaccaccaggacctccaggaatagtaatacaagat
ggccaacaaaccgttactggagaaaaaggagataccgggctccctggttatcctggtagc
aaaggagagaaaggtgccaaaggtgccactggattccaaggaaaccctggacaaccaggt
ctgtcagtgaatggaccacctggggcacctggattaacaggggaaagtggtgaaaagggt
gaacctggatttcctggaacatccttacctggacagaaaggcagagaggggttgcgcgga
cctcctggtttcccaggcccaccaggtccaatagaccccacacaggaatgcattccagga
cagtctggtgaatctggggccaatggagatccaggtcaacaaggcttccctggggaaaga
ggtcaaaaaggtgacaaaggagatgcctgccctacatgtgacactgtcccatcagcacta
cccgggccaccagggcctcaaggtcctcctgggacaccaggtgttcctggactagcagga
aacaagggagacaggggagaaccaggctatgatgggccacccggagcacctggaccacac
ggtgttcctggccttatggggagacctggagcaaaaggatcacctggtgaagtttatttt
gaaccacaattgaaaggggataaaggagaccctggtttccctggactgcaaggtacaact
ggaagagagggaagacctggaagagatggtcagccaggacagccgggtcccaaaggagtt
tcggcagcagttggtgccaaaggtgagcgtggaccacctggagacagtggatcccctggg
atacctggacagaaaggtttgcaaggtcatccagcatcaggtccaccagggcaacctgga
gaaagaggagaacctggaggaccaggattttcaggatcacctggcaacccaggaagtaag
ggggaacctggaaaactaactgttgtagctggaccaccaggaccaataggaagtgcaggt
tttcctggattgcctggagaacaaggtgacaagggtgctcctggattttcaggaagacct
ggaattcctggagaaaagggcgagcctggtgttgaaggaaaaggacttcctgggcctcct
ggtgaaaaaggtcatcaaggtatagagggtgcacgaggagtggatggtatccctggtcag
gcaggccgggagggtttacgcggtgaaccaggcacaccaggggcaaaaggtgagccaggt
ctgggccttccaggcccaaaaggattgattggacatccaggtcctcctggagccattgga
gaaaaaggaaacacagggacaacaggagtccctggagaacaaggctttccaggagttcca
gggcattctggggctaaaggtgacactggaccagctggagcacctggcttgagaggtaac
cctggtgtaccaggattcggcccacaaggggaacccgggcctcaaggacttccaggatct
ccaggagttccaggcccaataggagcaaagggaagccaaggctatccaggttttcctggt
gctgacatgccaggaccaaagggagacaaaggcacatcaggcatgcctggcattatgggt
atgcctggggaatccgggattcaaggtctaccaggaaaagatggatctccaggtcttcaa
ggacaaaaaggagatatgggttttatgggagttccaggaattcaaggccaacccggttca
ccaggaaatccaggcctaccaggagaaaagggtgaccctggtcctcctgggttccgtggc
cagtcaggaactgaaggttcaaaaggtgataagggtgaaagaggtttgcaaggagaccca
ggaacacttccgcccatggaacacatgaagggtgaaaaaggagaacagggcgcgagagga
caaactggaattcaaggagaaaaaggaacacatggtgatttgggatccactggaatgcct
ggaaaagatggggagcagggaatgccgggaaagccaggatcaaaaggagataaaggtatt
caaggattaccaggaggtccagggtttccgggacaaaaagggtccatgggagaaatgggt
gtgccagggcccagtggaccaaagggtgaacatggtatacagggaaatcctggtcttcct
ggcgttactggaatcaaaggcgaaaaaggatttaaaggtgaagaaggtgttccgggcatt
gggataccaggacctccaggcataaagggtgatgctggaactgatggtcttcaaggatta
ccaggcgaaacgggagacaaaggtgacattggtgtccctggaatgcctgggttacaagga
gaaaaaggattaccaggccttgctgggttcccaggtagcccgggtatacctggagaaaaa
ggaacaaagggcttccctgggcgggatggtgttcctggatcaaaaggacaaccaggtgaa
catggaattcagggcccccctggctcaattggagaaaagggagaacctggctatgatggg
gtcccgggaacacctggtgagaagggtgaaacaggtttacctgggagagctattcctgga
tatcctggtgaacgtggtgagaaaggtggtaaaggtgatgctggattatcaggctcacct
ggagtccctggcttccctggcattaaaggagatcaaggaattcctggaaaccaaggcata
caagggccacctggtactcctggacttcctggaattgcaatggaaggaccaaaaggtgac
agggggcagcctggtccccaaggatttcctggtgaccctggacctgcgggtagccctggt
ttcccaggacaagatggagccaaaggagagagaggtgacagaggctggcctggagctcct
ggttttcagggagtgaaaggtgaccctggatttcagggtcttcctggagatgcagggttt
ccaggtcaaacaggacacaaaggggaaagaggtcctccaggagtgtcaggatttccagga
ttgaaaggtacagaaggtcccatgggagagaaaggacaagggggagacagaggagaatct
ggtccaaaaggatcacaaggccttccagggcctgcaggtcaatttcagatattcaaagga
gacactggccctcctggactaccaggtccctctggtccaaaaggttttcctggtttccca
ggtcctaaaggagagcaaggcccagttggtgcagttggcttgcctggaccaagtggggtg
gcaggaataaatggtatcccagggcagaaaggagaattgggtcccattggcccaactggt
ccaagaggctatcaaggtccacccggtcaagatggcttgcctggcccaatgggcttacct
ggtcaagcttccatggctcatggcttccttataacaagacacagccaaacaattgaagtt
ccccagtgcccatttgggacagttccagtctatgatggctactctctgctctatgtacaa
gggaatgaaagggcccatggacaagatcttggtgctgcaggaagctgtcttcgtaaattc
agcacaatgccttttctattctgcaatataaataatgtatgcaactttgcatcaaggaat
gattattcttactggttgtccactcctgaaccaatgccaatgagcatggctcctgtaact
ggggagaatatccagccttttatcagcaggtgcagtgtttgtgaggcccctgctatgata
atggcagttcatagtcaaacaattcagataccctcttgtccaaatggatggatttcgttg
tggatcggatattcatttgtaatgcaaaccagtgctggtgcagaaggctcaggccaagca
ttagcatcaccagggtcttgtttagaagaattccgcagtgtgcctttcattgagtgccat
ggacgagggacctgcaactactatgccaatacttacagcttttggcttgctacaatagag
aggagtgaaatgttcaagaagcctactccatcaactctcaaagctggagatctccgtaca
catgtcagccgctgtcaagtatgcatgagacagacttaa
DBGET
integrated database retrieval system
