Burkholderia gladioli BSR3: bgla_1g12430
Help
Entry
bgla_1g12430 CDS
T01464
Name
(GenBank) DNA primase, small subunit
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgd
Burkholderia gladioli BSR3
Pathway
bgd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
bgla_1g12430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgd03400
]
bgla_1g12430
Enzymes [BR:
bgd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
bgla_1g12430
DNA repair and recombination proteins [BR:
bgd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
bgla_1g12430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEA59920
UniProt:
F2LD61
LinkDB
All DBs
Position
1:1383022..1385700
Genome browser
AA seq
892 aa
AA seq
DB search
MASKLAEYQRKRRFDASPEPAGKRGAQARPRHDPERELHFVVQEHHARRLHYDFRLELDG
VLKSWAVPKGPSTEPAEKRLAVHVEDHPLDYAGFEGEIPPGHYGAGSVRIDDQGVWRPDG
GIAGARRGYREGKLSFELDGHRLHGRWSLVRTHLPERNGKSSWLLIKARDEQAGPPGGER
IKAARKQPATAAAKRAGERAETHGDKHAEKHVEKQAEKRGAPPPRGKRAADRAGRREALP
ATLAPQLATLVAAPPEGEDWRYEMKFDGYRVLIRIAGRGRRRSVQVFTREGKDWSAKFRR
QCAALADLPVNNAWLDAEAVVLDARGLPDFGALQQALSAGEDAAIVFFVFDLPFLDGRAL
ADLPLDTRRERLAACFGGAGRQAVQLSPTLKGEPAELLAAASRAGLEGLIGKRADSPYRA
GRSASWIKLKCRQRQEFVIGGFSEPRGSRSGFGALLLGVHERPAQGRRRAGGLAYVGRVG
TGFDRRALDAIAARLRKIERGDAPFAVPPAERGDAVHWVEPRLVAECEFAGWTADGLVRQ
AAFIGLREDKPAGQIVRETAAPAGGQPTGGRMRTDHQATGSRSRGKAANHATGRNDDATV
AGVRVTHPERVVDTESGLRKIDVVRYYAAIAEHLLPQLAGRPVSLVRYMKGIDGPSFFQK
HAGPRGMGFVTRHPGLDPGHDALITLDDREALVGAAQFDALEFHTWNACVDRIERPDRLV
FDLDPDPALPWRAMIEAAQALRALLDALGLPCFCKTSGGKGLHLVVPITRHASWDQARDF
SQAVAQHLAGVAPERFSAKMGAQNRKGRIFVDYLRNGRGASTVAAWSARARPGMGVSVPI
DWDELPGTRGGAQWTIAEVPQRLASLRRDPWDGYEAARRRLTAAMRERLGKL
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaagctcgccgaataccagcgcaaacgccgcttcgacgcgagcccggaaccg
gccggcaagcgcggcgcccaggcgcgcccgcgccacgatcccgagcgcgagctgcacttc
gtggtgcaggagcatcacgcgcggcgcctgcattacgacttccgcctcgaactcgacggc
gtgctgaagtcctgggcagtgccgaaggggccgagcaccgaaccggccgagaagcggctc
gcggtgcatgtcgaggatcacccgctcgactatgccggcttcgagggcgagataccgccc
ggccactacggcgcgggcagcgtgcgcatcgacgaccagggcgtctggcggcccgatggc
ggtatcgccggcgcgcggcgcggctatcgcgagggcaagctcagtttcgaactcgatggc
catcgtctgcatggacgctggtcgctggtgcgcacgcaccttcccgagcgcaacggcaag
tcgtcgtggctgctgatcaaggcgcgcgacgagcaggcgggcccgccgggcggcgagcgc
atcaaggccgcgcgcaagcagccggccacggcggcggccaagcgtgccggcgagcgtgcc
gaaacgcatggcgacaagcatgcagagaagcatgtcgagaagcaggcagagaagcgcggc
gcaccaccgccacgcggcaagcgcgcggcggatcgcgccggccggcgcgaggcactgccg
gccacgctcgcgccgcagttggcgacgctcgtggccgcgccgcccgagggcgaggactgg
cgctacgagatgaagttcgacggctatcgcgtgctgatccgcattgccggccgcggccgc
cgacgctcggtgcaggtgttcacgcgcgagggcaaggactggagcgcgaaattccgccgg
caatgcgccgcgctcgccgacctgccggtgaacaacgcctggctggacgccgaggccgtg
gtgctcgacgcgcgcggcctgcccgatttcggggccctgcagcaggcgctgtcggccggc
gaggacgccgccatcgtgttcttcgtgttcgacctgccctttctcgatggccgggcgctg
gccgacctgccgctcgatacgcgccgcgagcggctggcggcctgcttcggcggcgcgggc
aggcaagccgtgcagctttcgccgacgctcaagggcgagccggccgagctgctcgccgcg
gcgtcacgggccggcctcgaaggcctgatcggcaagcgcgccgacagcccttatcgcgcc
gggcgcagcgcgtcgtggatcaagctgaagtgccgccagcgccaggaattcgtgatcggc
ggcttcagcgagccgcgcggcagccgcagcggattcggcgcgctgctgctcggcgtgcac
gagcggcccgcgcaagggcgtcgccgtgccggcggcctggcttatgtcggccgcgtcggc
accgggttcgatcggcgcgcgctcgacgcgatcgcggccaggctgcgaaagatcgaacgc
ggcgacgcgccgttcgcggtgccgccggccgaacgcggcgacgcggtgcactgggtcgag
ccgcggctggtggccgaatgcgagttcgcgggctggaccgccgacggcctggtccggcag
gctgccttcatcggcttgcgcgaggacaagccggccgggcagatcgtcagggaaacggcc
gcgcccgccggcgggcaaccgacaggaggcaggatgaggaccgatcatcaggcgacgggc
tcgcgctcgcgcggcaaggccgcgaaccacgccaccggcaggaacgacgacgccacggtg
gcgggtgtgcgcgtcacgcatcccgagcgcgtggtcgataccgagagcggcctgcgcaag
atcgacgtggtccgctattacgccgcgatcgccgagcacctgctgccgcagctcgcggga
cggccggtttcgctggtgcgctacatgaagggcatcgacgggccgtctttcttccagaag
cacgcgggcccgcgcggcatgggtttcgtcacgcgccaccccggcctcgatcccgggcac
gacgcgctgatcacgctcgacgatcgcgaggccctggtcggcgccgcgcagttcgacgcc
ctcgaattccacacctggaatgcctgcgtggaccggatcgagcggcccgaccggctggtg
ttcgacctcgatcccgacccggccttgccgtggcgcgcgatgatcgaggcggcccaggcg
ctgcgcgcgctgctcgacgcgctggggctgccgtgcttctgcaagaccagcggcggcaag
ggcctgcacctggtggtgccgatcacgcgccacgcttcctgggaccaggcgcgcgatttc
tcgcaggcggtggcgcagcacctggccggcgtcgcgccggagcgtttctcggcgaagatg
ggcgcgcagaaccgcaagggccgcatcttcgtcgactacctgcgcaacgggcgcggcgcc
agcacggtggcggcctggtcggcgcgggcgcggccggggatgggcgtgtcggtgccgatc
gattgggatgagctgcccggtacccgcggcggcgcgcaatggaccatcgccgaggtgccg
cagcggctggcctcgctgcggcgcgatccctgggacggctacgaggcggcgcgccggcgg
ctcaccgcggccatgcgcgagcgcctgggcaagctctga
DBGET
integrated database retrieval system
