Paraburkholderia atlantica CCGE1002: BC1002_1425
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Entry
BC1002_1425 CDS
T01217
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bge
Paraburkholderia atlantica CCGE1002
Pathway
bge03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BC1002_1425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bge03400
]
BC1002_1425
Enzymes [BR:
bge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BC1002_1425
DNA repair and recombination proteins [BR:
bge03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BC1002_1425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADG15501
UniProt:
D5W7V6
LinkDB
All DBs
Position
1:1585693..1588506
Genome browser
AA seq
937 aa
AA seq
DB search
MNDRLELYHRKRRFEDTPEPAGATTRKRAASKTGKTRKSAARAAPDTLSYVIQEHDARRL
HYDFRLELNGALLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGTFEGEIPPGNYGAGTVIV
WDRGTWEPAGGAAEAARSYAAGKLKFHLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERD
EEARDESDYDVLKELPGSVLADGASKGRKTKQAKTSRDGKATDAGKPARSASPRPTADPK
RPDIVATRTAQSLRELAASPSIEGAVKAALPASLTPELATLVDTAPPGGDWLYEIKFDGY
RVLARIDHASKKKGGAVSVFTRNGNDWTTKFSKQIEAIAGLDLQSAWLDGEAVVLDERDV
PSFQLLQNAFDAHRPQDIVIYLFDLPFLNGYDLRGVPLEQRRAILRALLEGVDDRVLRFS
NDFAFSAGELLNSACDMGLEGIIGKRRDSRYVSGRAPSWIKLKCRRRQEFVIGGYSEPAG
SREAFGALLLGVYDADGQLQYAGRVGTGFDAALLRSVKQALDAHASKRMPFASAPRERSR
TPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRGDKPARQIVRETARQGADVQQQTETA
TDDSQQPGTPKKRAATKTAKNATPAAAASAPARTTATRSRAQSEIAGVRISHPDRVIDKS
SGASKLELVQYYESIAEWMLPHLRERPVALVRAPEDIGGELFFQKHSQKLSIPHVTQHEG
LDPGHPALITIDTLAALVGAAQMGTVEFHTWNAVASNIEKPDRMVFDLDPDPSLGWQRMV
EAAQLTRSLLDELGLKSFVKTSGGKGFHVVVPLAKQAGWDEVKDFSQAVAQHMATTLPQY
FSAKMGAQNRKKKIFIDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDELESTTSGDQWG
IRNVHERLDGLASDPWADYAKTRQRITAAMKKRLGVA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgactcgagctctatcaccgcaagcgccgtttcgaggacacgcctgagccg
gccggcgcgacgacccgcaagcgcgcggcaagcaagaccggcaagacccgcaagagcgcc
gcgcgtgccgcgcccgacacgctgtcctacgtgatccaggagcacgacgcgcggcgtctg
cactacgacttccggctcgaactgaacggcgcgctgctatcgtgggcggttccgaagggg
ccgagcctggacccgtcggtcaagcggctcgcagtgcacgtcgaagatcatccggtcgaa
tacggtacgttcgagggcgagattccgcccggcaactacggcgcgggcaccgtgatcgtg
tgggatcgcggcacgtgggagccggcgggcggcgcggccgaagccgcgcggtcgtatgcg
gccggcaagctcaagtttcatttgcacggcgagaagctgcacggcggctggacgctggta
cgcagccatatgcgcggcagcggcgacaaggagcaatggctgctgatcaaggagcgcgac
gaggaagcgcgcgacgagagcgactacgacgtgttgaaagagctgccgggcagcgtgctg
gccgacggcgcttcgaagggcaggaaaacgaagcaagcgaaaacgtcgcgcgacggcaaa
gccacggacgcgggcaagccggcgagatccgcatccccgcgccccacagccgatcccaag
cgccccgacatcgtcgcgacccgtaccgcgcagtcgttacgcgaactcgctgcatcgcca
tcgattgaaggcgcggtcaaagccgcgttgcccgcgagcctgaccccggagctggcgacg
ctcgtcgacaccgcgccgccaggcggcgactggctgtacgaaatcaagttcgacggctac
cgggtgctcgcgcgcatcgaccacgcgtcaaaaaagaagggtggtgccgtcagcgttttc
acgcgcaacggcaacgactggaccacaaagttcagcaagcagatcgaggccatcgctggg
ctcgacctgcaaagcgcgtggctcgacggcgaagcggtcgtgctcgacgaacgcgacgtg
ccgagcttccagttgctgcaaaacgcgttcgatgcacatcgcccgcaggacatcgtcatc
tatctgttcgatctaccgttcctgaatggctacgacctgcgcggcgtaccgctcgaacag
cgccgcgcgattctgcgcgcgctgctcgaaggcgtcgacgatcgcgtgctgcgcttttcg
aacgacttcgcgttcagcgccggcgagctgctcaacagcgcgtgcgacatggggctcgaa
ggcatcatcggcaagcggcgtgacagccgctatgtgtcgggccgcgcgccgtcgtggatc
aagctgaagtgccggcggcgccaggagttcgtgatcggcggctactcggagccggccggc
agccgcgaggcgttcggcgcgctgctgctcggagtctacgacgccgacggccagttgcag
tacgcgggacgcgtcggcaccggcttcgacgccgcgctgctgcgctcggtcaagcaggcg
ctcgacgcgcacgcgagcaagcgcatgccgttcgcgagcgcgccgcgcgagcgcagccgc
acgcctgtgcattgggtcgagccggtgctcgttgccgaatgcaacttcgccgaatggacg
agcgacggcatcgtacgccaggcgtcgttcgtcagcctgcgcggcgacaaaccggcgcgc
cagatcgtcagggaaactgcccgacaaggagccgacgtgcaacagcaaaccgaaaccgcc
accgacgattcgcagcaaccaggcacgccgaaaaagcgcgcagccacgaagaccgcaaag
aacgccacgcccgccgcggcggcaagcgcgcccgcccgaaccacggcaacacgctcgcgc
gcacaaagcgaaatcgccggcgtgcgcatctcgcatcccgatcgcgtgatcgacaagagc
agcggtgcaagcaagctcgaattggtgcagtactacgaatcgatcgccgaatggatgctg
ccgcatctgcgtgagcggcccgtcgcgctggtgcgtgcacccgaggatatcggcggcgag
ctgttcttccagaagcacagccagaagctgtcgattccgcacgtcacgcagcacgaggga
ctcgacccgggccatccggcgctgatcacgatcgacacgctcgccgcgctggtcggtgcc
gcgcagatgggcaccgtcgaatttcacacgtggaatgcggtcgcgtcgaatatcgaaaag
cccgatcggatggtgttcgacctcgacccggacccgtcgctcggctggcaacgcatggtc
gaggccgcgcaactgacccgctcgctgctcgacgaactgggcctgaagtcgttcgtcaag
acgagcggcggcaagggctttcacgtggtcgtgccgctcgcgaagcaggccggttgggat
gaagtcaaggatttttcgcaggcggttgcgcagcatatggcgacgacgctgccgcagtac
ttcagcgcgaagatgggtgcgcaaaatcgcaagaagaagatcttcatcgactatctgcgc
aacaaccgcggctctagcacggtggccgcattctcggcgcgcgcgcggccggggctcggc
gtgtcggtgccgctcgcgtgggacgaactcgagagcacgacgagcggcgatcaatggggt
atccgcaacgtccacgaacgcctggacggcctcgcaagcgacccatgggccgactatgcg
aagacacgtcagcgcatcaccgcggcgatgaaaaaacgtctgggcgtggcgtga
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