KEGG   Burkholderia sp. CCGE1002: BC1002_1425Help
Entry
BC1002_1425       CDS       T01217                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bge  Burkholderia sp. CCGE1002
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bge00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BC1002_1425
Enzymes [BR:bge01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BC1002_1425
DNA repair and recombination proteins [BR:bge03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BC1002_1425
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
1:1585693..1588506
Genome map
AA seq 937 aa AA seqDB search
MNDRLELYHRKRRFEDTPEPAGATTRKRAASKTGKTRKSAARAAPDTLSYVIQEHDARRL
HYDFRLELNGALLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGTFEGEIPPGNYGAGTVIV
WDRGTWEPAGGAAEAARSYAAGKLKFHLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERD
EEARDESDYDVLKELPGSVLADGASKGRKTKQAKTSRDGKATDAGKPARSASPRPTADPK
RPDIVATRTAQSLRELAASPSIEGAVKAALPASLTPELATLVDTAPPGGDWLYEIKFDGY
RVLARIDHASKKKGGAVSVFTRNGNDWTTKFSKQIEAIAGLDLQSAWLDGEAVVLDERDV
PSFQLLQNAFDAHRPQDIVIYLFDLPFLNGYDLRGVPLEQRRAILRALLEGVDDRVLRFS
NDFAFSAGELLNSACDMGLEGIIGKRRDSRYVSGRAPSWIKLKCRRRQEFVIGGYSEPAG
SREAFGALLLGVYDADGQLQYAGRVGTGFDAALLRSVKQALDAHASKRMPFASAPRERSR
TPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRGDKPARQIVRETARQGADVQQQTETA
TDDSQQPGTPKKRAATKTAKNATPAAAASAPARTTATRSRAQSEIAGVRISHPDRVIDKS
SGASKLELVQYYESIAEWMLPHLRERPVALVRAPEDIGGELFFQKHSQKLSIPHVTQHEG
LDPGHPALITIDTLAALVGAAQMGTVEFHTWNAVASNIEKPDRMVFDLDPDPSLGWQRMV
EAAQLTRSLLDELGLKSFVKTSGGKGFHVVVPLAKQAGWDEVKDFSQAVAQHMATTLPQY
FSAKMGAQNRKKKIFIDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDELESTTSGDQWG
IRNVHERLDGLASDPWADYAKTRQRITAAMKKRLGVA
NT seq 2814 nt NT seq  +upstreamnt  +downstreamnt
atgaacgaccgactcgagctctatcaccgcaagcgccgtttcgaggacacgcctgagccg
gccggcgcgacgacccgcaagcgcgcggcaagcaagaccggcaagacccgcaagagcgcc
gcgcgtgccgcgcccgacacgctgtcctacgtgatccaggagcacgacgcgcggcgtctg
cactacgacttccggctcgaactgaacggcgcgctgctatcgtgggcggttccgaagggg
ccgagcctggacccgtcggtcaagcggctcgcagtgcacgtcgaagatcatccggtcgaa
tacggtacgttcgagggcgagattccgcccggcaactacggcgcgggcaccgtgatcgtg
tgggatcgcggcacgtgggagccggcgggcggcgcggccgaagccgcgcggtcgtatgcg
gccggcaagctcaagtttcatttgcacggcgagaagctgcacggcggctggacgctggta
cgcagccatatgcgcggcagcggcgacaaggagcaatggctgctgatcaaggagcgcgac
gaggaagcgcgcgacgagagcgactacgacgtgttgaaagagctgccgggcagcgtgctg
gccgacggcgcttcgaagggcaggaaaacgaagcaagcgaaaacgtcgcgcgacggcaaa
gccacggacgcgggcaagccggcgagatccgcatccccgcgccccacagccgatcccaag
cgccccgacatcgtcgcgacccgtaccgcgcagtcgttacgcgaactcgctgcatcgcca
tcgattgaaggcgcggtcaaagccgcgttgcccgcgagcctgaccccggagctggcgacg
ctcgtcgacaccgcgccgccaggcggcgactggctgtacgaaatcaagttcgacggctac
cgggtgctcgcgcgcatcgaccacgcgtcaaaaaagaagggtggtgccgtcagcgttttc
acgcgcaacggcaacgactggaccacaaagttcagcaagcagatcgaggccatcgctggg
ctcgacctgcaaagcgcgtggctcgacggcgaagcggtcgtgctcgacgaacgcgacgtg
ccgagcttccagttgctgcaaaacgcgttcgatgcacatcgcccgcaggacatcgtcatc
tatctgttcgatctaccgttcctgaatggctacgacctgcgcggcgtaccgctcgaacag
cgccgcgcgattctgcgcgcgctgctcgaaggcgtcgacgatcgcgtgctgcgcttttcg
aacgacttcgcgttcagcgccggcgagctgctcaacagcgcgtgcgacatggggctcgaa
ggcatcatcggcaagcggcgtgacagccgctatgtgtcgggccgcgcgccgtcgtggatc
aagctgaagtgccggcggcgccaggagttcgtgatcggcggctactcggagccggccggc
agccgcgaggcgttcggcgcgctgctgctcggagtctacgacgccgacggccagttgcag
tacgcgggacgcgtcggcaccggcttcgacgccgcgctgctgcgctcggtcaagcaggcg
ctcgacgcgcacgcgagcaagcgcatgccgttcgcgagcgcgccgcgcgagcgcagccgc
acgcctgtgcattgggtcgagccggtgctcgttgccgaatgcaacttcgccgaatggacg
agcgacggcatcgtacgccaggcgtcgttcgtcagcctgcgcggcgacaaaccggcgcgc
cagatcgtcagggaaactgcccgacaaggagccgacgtgcaacagcaaaccgaaaccgcc
accgacgattcgcagcaaccaggcacgccgaaaaagcgcgcagccacgaagaccgcaaag
aacgccacgcccgccgcggcggcaagcgcgcccgcccgaaccacggcaacacgctcgcgc
gcacaaagcgaaatcgccggcgtgcgcatctcgcatcccgatcgcgtgatcgacaagagc
agcggtgcaagcaagctcgaattggtgcagtactacgaatcgatcgccgaatggatgctg
ccgcatctgcgtgagcggcccgtcgcgctggtgcgtgcacccgaggatatcggcggcgag
ctgttcttccagaagcacagccagaagctgtcgattccgcacgtcacgcagcacgaggga
ctcgacccgggccatccggcgctgatcacgatcgacacgctcgccgcgctggtcggtgcc
gcgcagatgggcaccgtcgaatttcacacgtggaatgcggtcgcgtcgaatatcgaaaag
cccgatcggatggtgttcgacctcgacccggacccgtcgctcggctggcaacgcatggtc
gaggccgcgcaactgacccgctcgctgctcgacgaactgggcctgaagtcgttcgtcaag
acgagcggcggcaagggctttcacgtggtcgtgccgctcgcgaagcaggccggttgggat
gaagtcaaggatttttcgcaggcggttgcgcagcatatggcgacgacgctgccgcagtac
ttcagcgcgaagatgggtgcgcaaaatcgcaagaagaagatcttcatcgactatctgcgc
aacaaccgcggctctagcacggtggccgcattctcggcgcgcgcgcggccggggctcggc
gtgtcggtgccgctcgcgtgggacgaactcgagagcacgacgagcggcgatcaatggggt
atccgcaacgtccacgaacgcctggacggcctcgcaagcgacccatgggccgactatgcg
aagacacgtcagcgcatcaccgcggcgatgaaaaaacgtctgggcgtggcgtga

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