Burkholderia glumae BGR1: bglu_1g10900
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Entry
bglu_1g10900 CDS
T00905
Name
(GenBank) DNA primase small subunit
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgl
Burkholderia glumae BGR1
Pathway
bgl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
bglu_1g10900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgl03400
]
bglu_1g10900
Enzymes [BR:
bgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
bglu_1g10900
DNA repair and recombination proteins [BR:
bgl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
bglu_1g10900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACR28259
UniProt:
C5ADZ9
LinkDB
All DBs
Position
1:1194578..1197295
Genome browser
AA seq
905 aa
AA seq
DB search
MTDTLSEYQRKRRFDATPEPAGAKRRGAPARRRDGAAAPLRFVVQVHHARRLHYDFRLEL
DGVLKSWAVPKGPSPDPADKRLAIQVEDHPLDYASFEGEIPPGHYGAGSVRIDDAGVWRP
EGGVAGARRGYRDGKLTFELDGAKLRGRWSLTRTAMPGSRGKSSWLLVRAHEDAAGSEPA
DQAADQLVDQAAARRRTRQGRPAAKPAAKRPAKPAAAQPAASASGTATALPGARRAALPD
ALAPQLATLVAAPPEDEGWRYEMKFDGYRVLIRIAGRGGRRSVRVLTREGLDWSAKFGAQ
CAAFAALPVDDAWLDAEAVVLDARGVPDFAALQRALSDGDDAAIVCFVFDLLHLDGRALQ
AVPLDARRARLAALLAGADSGCLRFSPTLDGAPAALLEAAARAGLEGLIGKRADGAYRAG
RSRQWIKLKCRQRQEFVIGGYSAPRGSRSHFGALLLGVHAAPPRSTRRGGQAARERALQY
VGRVGTGFDAQQLAALAKRLAALERERAPFAVPPPSRGDAVRWVEPRLVAECEFAGWTRD
GLLRQAAFIALREDKPTARVVRETALPTAGRTTGGSMDSNEAASAGHAARRRRGGADEPV
EAGQARPAGAASVAGVRITHPERVVDAQGGFRKIDVVRYYESVARWLLPQLSGRPVSLVR
YMKGIGGESFFQKHAGARGMGFVTRHPGLDPGHDALMTLDDTAALVGAAQFDAIEFHTWN
ATVDRIERPERLVFDLDPDPALPWERMIEAAGLVRALLEALGLPAFCKTSGGKGLHVVVP
IVRHTEWDDAKAFSQAVARHLAGQLPERFTAKMGPENRRGLIFVDYLRNGRGASTVAAYS
ARARPGMGVSVPLAWEEVAATTGGAQWTIANLSARLDAQRADPWDGYDAARTRITAAMRK
RLGER
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacgctctccgagtatcaacgcaagcgccgcttcgacgcgacgcccgagccg
gccggcgcgaagcggcgcggggcgcccgcgcggcgtcgggacggcgccgccgcgccgctg
cgtttcgtcgtgcaggtgcatcacgcgcggcgtctgcattacgacttccgcctcgaactc
gacggcgtgctcaagtcgtgggccgtgccgaaaggcccgagccccgatccggccgacaag
cggctcgccattcaggtcgaggaccatccgctcgactatgcgagcttcgagggcgagatt
ccgcccggccactacggcgcgggcagcgtgcggatcgacgatgccggcgtctggcgccca
gaaggcggcgtggcgggtgcccggcgcggctaccgcgacggcaagctcacgttcgaactc
gacggcgcgaagctgcgcgggcgctggtcgctgacccgcaccgcgatgccgggcagccgt
ggcaagtcctcgtggctgctcgtgagagcgcatgaggacgcggccggcagcgagccggcg
gaccaagcggccgaccaactggtggaccaggcggcagcgcggcggcgcacgcggcagggc
cggccggccgcgaagcccgcggcgaagcgcccggccaagcccgcggccgcgcagccggcc
gcatcggcctcaggcaccgccaccgcgctccccggcgcccgccgcgcggccttgccggac
gcgctcgcgccgcaactggcgacgctggtcgccgcgccgcccgaggacgagggctggcgc
tacgagatgaagttcgacggctaccgcgtgctgatccgcatcgccggccgcggcgggcgc
cgctcggtgcgcgtgctgacgcgcgaagggctcgactggagcgcgaagttcggcgcgcag
tgcgccgcgttcgccgcgttgccggtcgacgatgcctggctcgacgccgaggccgtggtg
ctggacgcgcgcggcgtgcccgatttcgcggcactgcaacgggcgctgtcggacggcgac
gatgcggccatcgtctgcttcgtgttcgacctgctgcatctggacggccgcgcgctgcag
gcggtgccgctcgatgcgcgccgcgcgcggctggccgcgctgctggccggcgccgattcc
ggctgcctgcgcttctcgccgacgctcgacggcgcgccggcggcgctgctggaggccgcc
gcgcgggccgggctcgaaggcctgatcggcaagcgcgccgacggcgcctaccgcgccgga
cgcagtcgccaatggatcaagctcaaatgccggcagcgccaggaattcgtgatcggcggc
tacagcgcgccgcgcggcagccgcagccacttcggcgcgctgctgctcggcgtccacgcg
gcgccgccgcgctcgacgcggcgcggcggccaggccgcgcgcgagcgggccttgcagtat
gtcggccgggtcgggaccggcttcgatgcgcagcagctcgccgcgctggcgaagcggctc
gccgcgctcgagcgcgagcgcgcgccgttcgccgtgccgccgccttcgcgcggcgacgcg
gtgcgctgggtcgagccgaggctggtcgccgagtgcgagttcgcaggctggacccgtgac
gggctgctgcggcaggccgccttcatcgcgctgcgcgaggacaagccgaccgcgcgcgtc
gtcagggaaaccgccttgcctacggcggggcgaaccacgggaggcagcatggatagtaac
gaagcagcctcggccggccatgccgcgcgccgtcgtcgcggcggcgcggacgaaccggtc
gaggcaggccaggccaggccggccggcgcggcaagcgtggcgggagtgcgcatcacgcat
cccgagcgcgtcgtcgacgcgcagggcggctttcgcaagatcgacgtggtgcgctactac
gagtcggtggcgcgctggctgctgccgcaactgagcgggcggcccgtgtcgctggtgcgc
tatatgaagggcatcggcggcgaatcgttcttccagaagcacgcgggcgcgcgcggcatg
ggcttcgtcacgcgccacccggggctcgatccgggccacgacgcgctgatgacgctcgac
gacacggccgcgctggtgggcgccgcgcaattcgacgccatcgagtttcacacctggaac
gcgacggtggaccggatcgagcggcccgagcgcctggtgttcgatctcgatcccgatccg
gcgctgccgtgggagcggatgatcgaggcggccggcctagtgcgcgcgctgctcgaggcg
ctgggcctgccggcgttctgcaagaccagcggcggcaaggggctgcatgtggtggtgccg
atcgtgcggcataccgaatgggacgacgcgaaggcgttctcgcaggcggtggcgcggcat
ctggccgggcagctgccggagcgcttcaccgcgaagatggggccggagaatcgccgcggc
ctgatcttcgtcgactacctgcgcaacggccgcggcgcgagcacggtggccgcctattcg
gcgcgcgcgcggcccgggatgggcgtctcggtgccgctcgcctgggaggaggtggcggcc
accacgggcggcgcgcaatggacgatcgcgaacctgtcggcgcggctcgacgcgcagcgg
gccgacccgtgggacggctacgacgccgcacgcacgcgcatcacggcggcgatgcgcaag
cgcctcggcgagcgctga
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