Bordetella genomosp. 13: CAL15_11970
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Entry
CAL15_11970 CDS
T05441
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bgm
Bordetella genomosp. 13
Pathway
bgm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CAL15_11970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bgm03400
]
CAL15_11970
Enzymes [BR:
bgm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CAL15_11970
DNA repair and recombination proteins [BR:
bgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CAL15_11970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARP95027
UniProt:
A0A1W6ZCK3
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All DBs
Position
2670819..2673335
Genome browser
AA seq
838 aa
AA seq
DB search
MPASLKTYREKRNFSVTSEPAGGGRANTREPAFVIQKHWATRLHYDLRLELDGAMKSWAV
PKGPSYDPTIKRMAVQVEDHPIAYNQFEGEIPKGQYGAGKVIIWDEGTWQPVGDPRKGYR
EGHLKFTLRGVKMQGQWALVRLKRGDEKQPTWLLIKDRDELARPDAEFSVVDEMPDSVVP
LRGKRRAASTRSRQTEQAPAVEAAMPGVASDMPRTLKPQLATLVDRAPASAADWLYEIKY
DGYRILARIENGQARLYTRNGHDWTDRMPHLAEALARAKADAWVDGEIVVLTDQGTPSFQ
ALQNAFDNGRTAGIQFFAFDLPYVAGRDLRGEPLTVRRALLEQLVAPIRRKAVQLSATLD
AGPSELVRTACGMGLEGIIGKRRDSTYVSRRSDNWIKLKCGQRQEFVIVGYTDPGGRRVG
FGSLLLAVHDDEGGLRYAGNVGTGFDDDMLRRLKQQLDALRTDRSALRSRAGVEGRPHWV
RPELVAEVSFGEWTQGGHVRHPVFRGLRGDKPAGAIVRERPQAPPKETPRATGSKPATTR
PASKSSSGKTASGRLSSPERVIDPSTGLTKLDLARYYGLVAPLMVPHLKGRPVAFLRAPQ
GIHHQLFFQKHQDGTIPDVRNLPEKLYPDHPPMMEVATDMGILSAAQMNVVEFHTWNAVK
TSIARPDRMLFDLDPGDGVAWPAIREGAQLVQALLRELDLACWLKTSGGKGLHVVVPLRK
QYDWDAVRQFSEVIVRHLARTLPQRFVAKSGPKNRVGKIFVDYLRNGFGATTVAAWSARA
RSGMGISVPIAWDELPRLSGAAQWTIANAHDRLDVGNAPWDDYTPQSLGKAMAILEFR
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgccggcctcgctgaagacctatcgggaaaagcgcaacttctccgtcacctcggagccg
gccggcggcggccgcgccaacacgcgcgagccggccttcgtgatccagaaacactgggcc
acccggctgcactatgacctgcgcctggaactggacggcgcgatgaagagctgggccgtg
ccgaagggccccagctacgaccccaccatcaagcgcatggccgttcaggtcgaggaccac
cccatcgcctacaaccagttcgaaggcgagattcccaaggggcagtacggcgcgggcaag
gtcatcatctgggacgaaggcacctggcagcccgtgggcgaccctcgcaaggggtatcgc
gaaggccacctgaagttcacgctgcgcggcgtgaagatgcagggtcagtgggccctggtg
cgcctgaagcgcggggacgaaaagcagccgacgtggctgctgatcaaggaccgcgacgaa
ctggcccgtcccgacgccgagttcagtgtggtggacgaaatgcccgacagcgtggtcccg
ctgcgcggcaagcggcgcgcagcgtcgacgcggtcgcggcagacggaacaggcgcctgcc
gtggaagcggccatgcccggcgtggccagcgacatgccgcgcacgctcaagccgcagctg
gccacgctggtggaccgcgcgcccgcctccgccgcggactggctgtacgagatcaagtac
gacggctaccgcatcctggcgcgcatcgagaacgggcaggcgcgactctacacgcgcaat
ggccacgactggaccgaccgcatgccgcacctggccgaagccctggcgcgggccaaggcc
gatgcctgggtggacggcgagatcgtcgtgctgaccgaccagggtacgcccagcttccag
gcgctgcagaacgccttcgacaacgggcgcacggcaggcatccagttcttcgccttcgac
ctgccctacgtggcgggccgcgacctgcgcggcgaacctttgacggtgcggcgcgcgctg
ctggaacagctggtggcgccgatccggcgcaaggccgtgcagctcagcgccacgctggat
gccggcccgagcgaactggtgcgcacggcttgcggcatgggcctggaaggcatcatcggc
aagcgccgcgactccacctatgtgtcgcgccgctcggataactggatcaagctgaagtgc
ggccagcggcaggagttcgtgatcgtgggctacacggatccgggcgggcggcgtgtgggc
ttcggatccctgctgctggcggtgcacgacgacgagggcggcctgcgctacgcgggcaac
gtgggcaccggcttcgacgacgacatgctccggcggctgaagcagcagctggacgccttg
cgcaccgaccggtccgcgctgcgcagccgcgcgggcgtcgaaggccggccgcactgggta
cggcccgaactggtggccgaggtgtcgttcggggaatggacccagggcgggcacgtgcgc
catccggtgttccgggggctgcgcggcgacaagccggcgggcgccatcgtgcgcgagcgg
ccgcaggcgccgccgaaggaaacgccgcgcgccacgggcagcaagcccgcgacgacccgg
cccgcgtcgaagtcgtcttcgggcaagacggcgtcgggacggctgtccagtcccgagcgc
gtcatcgatccgtccacggggctgaccaagctggacttggcccgctactacgggctggtc
gcgccgctgatggtgccccacctgaaaggcaggcccgtcgccttcctgcgcgccccccag
ggcatacatcatcagctgttcttccagaagcaccaggacggcaccatccccgacgtccgg
aacctgcccgagaagctctaccccgaccacccgccgatgatggaagtggcgaccgacatg
ggcattctgtcggctgcgcagatgaatgtggtggagttccacacctggaacgcggtgaag
accagcatcgccaggcccgaccgcatgctgttcgacctggaccctggcgacggcgtggcg
tggcccgccattcgcgagggcgcgcagctggtgcaggcgctgctgcgcgaactggacctg
gcgtgctggctgaagaccagcggcggcaagggactgcacgtggtcgtgccgctgcgcaag
caatacgactgggacgccgtgcggcagttctccgaagtcatcgtgcgccacctggcccgc
acgctgccgcagcgcttcgtggccaagagcggcccgaagaaccgcgtgggaaagatcttc
gtcgactacctgcgcaacggcttcggcgccaccacggtggcggcctggtccgcgcgggcg
cgttccggcatgggcatctcggtacccatcgcgtgggacgaactgccgcgactgtccggc
gccgcgcaatggacgatcgccaatgcgcacgatcgcctggacgtggggaacgcgccgtgg
gacgactacacgccgcagtcgctgggaaaggccatggcaatcctggagttccgataa
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