Halalkalibacterium halodurans: BH2209
Help
Entry
BH2209 CDS
T00039
Name
(GenBank) BH2209; unknown conserved protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bha
Halalkalibacterium halodurans
Pathway
bha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BH2209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bha03400
]
BH2209
Enzymes [BR:
bha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BH2209
DNA repair and recombination proteins [BR:
bha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BH2209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
BAB05928
UniProt:
Q9KAS8
LinkDB
All DBs
Position
2332098..2333933
Genome browser
AA seq
611 aa
AA seq
DB search
MKPMLLQTTTDLPTGDNWRYEVKYDGFRTILFWTKETIRLESRNERLLTDQFPEIHDFCQ
RISNKVEAWLPITIDGELVHLVSPYRAHFAPIQTRSFMRKHETIAASSIKTPATLLAFDI
LELKGKTLVDLPYDERKKQLKALLKAIDVPLEPTIQSNACLQMIPAQTDGQALWQAVELH
HGEGVVAKDRFSDWTEGKRTNRWLKKKNFRQVTVFLTAYDPVNGYFHFAVYRDGTSVEVG
NVTHGFEDHERETLIAFMKQNGMKKGKRYVLEPSVCFDVDCIDFDGKHLREPMFHRFRLD
VKPAQCTWKSLQRQLAPLPPQVEITHPDKPLWPRQMIQKIDYLYYLQEVAPAMLPFLIDR
PLTVIRYPHGVRSNTEREAFYQKNCPDYAPSFVKTVRLDEIRYIVCNDIQTLVWLGNQLA
LEFHIPYHPVPYTKPSEIVFDLDPPSISQFSLAVKAAQLMKNMFDALKLQSFVKTSGGKG
LQLYLPLPDNTFTYDDTRLFSKTVCELLCSQFPEDFTTERLKKHRGQRLYLDYLQHDEGK
TIVAPFSPRGNEGGFIATPLRWEEVTNTLSPDQFPMKAVLERYRNGIQPFATFAEAKKTQ
PFADVLKKFKR
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaccaatgcttttacagacaacgaccgatttaccgacaggcgataactggcgctat
gaagtgaagtacgatgggtttcgtacgatcctcttttggacaaaggagacgattcgcctt
gagagcagaaatgaacgacttttgaccgatcagtttcctgaaatacacgatttttgccaa
cgaatttccaataaagtggaagcctggctccctataacgattgatggtgagcttgtccat
cttgttagcccgtaccgagcccactttgccccgattcagacgcgatcgtttatgcgtaag
cacgaaacgattgcagctagtagcattaagacacctgctactttattggcgtttgacatc
cttgaactaaaaggaaaaacgcttgtagacttaccgtatgatgaacgaaaaaaacaactt
aaggccctcctaaaggcgatcgatgttccgttagaaccaacgatccaatcgaatgcgtgc
ttgcaaatgatcccggcacaaaccgatggtcaagccctttggcaagccgtagagctccat
cacggggaaggagtcgtcgctaaggataggttctccgattggacagaaggaaaacgcaca
aatcgctggttaaaaaagaagaattttcgacaggtgaccgtttttttaacggcctatgat
cctgtgaacggctattttcattttgctgtctatcgggatggaactagcgtggaggttgga
aatgtcacccacggttttgaggatcacgaacgagaaacactcattgcttttatgaaacaa
aatggaatgaaaaaagggaaaagatatgtccttgaaccgtccgtttgctttgatgtagat
tgcatcgattttgatgggaaacatttgcgcgaaccgatgttccatcgattcagactcgat
gtcaaacctgcacaatgcacgtggaaatcgctgcaaagacagctagccccgctgcctcca
caagttgagataactcatccagataagccgctttggccgagacaaatgattcaaaagatc
gattatctttactatttgcaggaggttgcgcctgcgatgttaccttttttaatagatcga
ccattgaccgtcatccgttaccctcacggtgtacgaagcaacacagagcgcgaggcattc
tatcaaaagaactgccccgattatgccccgtcgtttgttaaaacggttcgtttagacgaa
atccgttatattgtatgcaatgatattcaaacattagtttggctcggaaaccagcttgca
cttgaatttcatatcccttatcaccccgttccttacacaaagccgagtgagattgttttt
gacttagacccaccatcaattagtcagttttcacttgctgttaaggcggctcaactaatg
aaaaacatgttcgatgcccttaaattacaatcatttgtgaaaacatcgggaggaaaaggg
ttacagctctacttgccactcccagacaacacgttcacctatgacgatacccgattattt
tcgaaaacggtttgcgagttgctttgcagccaattccctgaagatttcacgaccgaacga
ttaaaaaaacaccgaggacagcggctctatttagattacttacagcacgatgaaggaaaa
acgatcgtcgcccccttttctccccgaggcaatgaaggaggatttatcgcgaccccttta
cgttgggaagaagtgactaacaccttatctcccgatcaatttccgatgaaagctgtccta
gagcggtaccgaaacggcattcagccttttgcaacctttgccgaggcaaagaaaactcag
ccttttgccgacgttttaaaaaaattcaaacgttaa
DBGET
integrated database retrieval system
