Benincasa hispida (wax gourd): 120091027
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Entry
120091027 CDS
T07258
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bhj
Benincasa hispida (wax gourd)
Pathway
bhj03020
RNA polymerase
bhj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120091027
09124 Replication and repair
03420 Nucleotide excision repair
120091027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhj03021
]
120091027
03400 DNA repair and recombination proteins [BR:
bhj03400
]
120091027
Enzymes [BR:
bhj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120091027
Transcription machinery [BR:
bhj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120091027
DNA repair and recombination proteins [BR:
bhj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120091027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
120091027
NCBI-ProteinID:
XP_038904743
LinkDB
All DBs
Position
11:complement(6787501..6796843)
Genome browser
AA seq
1847 aa
AA seq
DB search
MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVSEDDPK
FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQESDQPAKKGRGGCGAQQPKITI
EGMKMTAEYKPQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
LTRTSAWHSESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDY
SPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNNR
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgcttcccttactccccggcagaggttgccaaagttcgaatggttcagttt
ggcattcttagccccgatgagattaggcaaatgtccgtggtacagattgagcatggtgaa
actacggagaggggtaagccaaaagtagctggtttgagtgacccgcgacttggtacaatc
gacagaaaaatgaagtgcgaaacttgcactgcaaatatggctgagtgccctgggcacttt
gggcacctggagcttgccaagccaatgtttcatattgggtttatgaagaccgtgctcact
attatgcgttctgtttgcttcaattgctcaaagattctagttagcgaggatgaccccaag
tttaaacaagcattgcggataaagaatcccaagaacaggcttagaaagattttggatgcc
tgcaagaacaaaaccaagtgtgaaggtggagatgaaattgatgttcaaggtcaagaatca
gatcaaccggccaaaaagggtcggggtggctgtggtgctcagcagcctaagatcacaatt
gagggtatgaaaatgactgcagagtacaagcctcaaaggaagaaaaacgacgatcaggag
cagctgcctgaacctgtggaaagaaaacagacacttactgctgaaagggttcttggcatt
ctgaaaagaataactgatgaggattgcaaactcttgggcctaaatccaaagtatgctcgg
cctgactggatgattctgcaagtccttccaattccaccacctcctgtgagaccatcagtt
atgatggacacctcatctagaagtgaggatgatctaactcatcagttggcgatgattata
aggcacaacgaaaacctcaggagacaagagagaaatggttctcctgcacatatcatttca
gagtttgcacaactattgcagtttcacatagccacatattttgataatgaattacctgga
ctacccagggccacacagagatctgggaggcccattaaatctatttgtagtaggctcaag
gcaaaagaaggccggataagaggaaacttgatgggaaaacgtgtagatttttcagctcga
actgtgataacacctgatccaacaattaatattgatgaactgggagtaccgtggagcatt
gctttgaaccttacgtatccggagaccgtgacaccatataatatagagaggttaaaggaa
cttgttgaatatggtccccatcctccccctggtaaaaccggtgccaagtacatcatacga
gatgatgggcagaggcttgatcttcgatatcttaaaaaaagtagtgatcatcatttggag
cttgggtacaaggtggagcgtcatttaaacgatggtgattttgtactttttaatcgtcag
cctagtctccataaaatgtctataatgggacacagaatcaagattatgccctactcaact
ttccgcctaaatttatctgtcacgtcaccttacaatgctgattttgatggcgatgaaatg
aatatgcatgttcctcagtcatttgagacaagggcagaagtattggaactcatgatggtt
cccaaatgcattgtgtcgcctcagtcaaaccgtcctgtaatgggtattgtgcaagatact
ctgctagggtgccggaaaattacaaaaagggacacctttataacgaaggatgtttttatg
aatatcttgatgtggtgggaagattttgatgggaaaattcctgcccctgcaattttaaag
ccacaacctctttggacgggaaaacaagtttttaatcttattataccaaagcagattaat
ctcacgagaacttctgcctggcattctgagtctgaaactggattcataactcctggggat
acttttgttaggattgagaagggggagctactttctggaactctttgcaagaaggcactt
ggaacatcaactggaagtcttatacatgttatttgggaggaggttggtccggatgcagcc
cgaaaatttctgggtcatactcaatggctcgtcaattactggcttttgcagaatgctttt
agcattgggattggggatacaattgctgatgcagcaaccatggagaaaattaatgaaact
atctctgcagctaaaaatgaagtgaaaaacctcatcaagaaagcccaagaacggagttta
gaacccgaacctggacgaacgatgatggattcatttgaaaacaaagtgaatcaggtcctg
aataaggctcgtgatgatgctggtagtagtgcacaaaaaagtttgtcagagagtaacaat
ctgaaagctatggttactgcaggatccaagggcagttttatcaatatctcccagatgact
gcttgtgtggggcagcagaatgttgaagggaagcgaataccatttggtttcattgatcga
acattgccccatttcactaaagatgattatgggcccgaaagtcgtggctttgttgagaac
tcgtatcttcgaggattgactccacaggagttcttttttcatgctatgggtggtagggaa
ggtcttattgatactgcagtcaagacctctgaaacagggtacattcagaggaggctggtg
aaggccatggaggatatcatggttaaatatgatgggactgttagaaactcattgggtgat
gttattcagttcctttatggtgaagatggtatggatgctgtttggatagaatctcagaaa
ctagattctttgaaaatgaagaaaaaggaatttgagaggatcttcaggtatgagtttgaa
gatgaaaactggaagccaaattacatgttgccagagcatgtagaagatttgaaaaccatc
agagaattccggaatgtgtttgaggctgaggttcaaaagcttgaagcggacaggtatcaa
ttgggaacagaaattgcaactacaggtgaaaactcttggccaatgccagttaacctcaaa
aggcttattcagaatgcacaaaagaccttcaagattgactttcgaagggcttctgatatg
catcctatggaaattgttgaagctattgacaaacttcaagagaggctgaaggtcgttcct
ggggaagatcctctaagtgtggaggctcagaagaacgccacccttttcttcaatatatta
ctccgaagcacttttgctagcaaaagggttttggatgaatacaggcttacacgtgaagca
tttgagtgggttattggagaaatagaatcacgcttccttcagtcactagttgcacctggt
gaaatgattggctgtgttgctgcacagtccattggagagccagcaactcagatgactctt
aataccttccattatgctggtgtcagtgccaaaaatgtcactcttggtgttcccagattg
agggaaatcatcaatgtagccaagagaatcaaaacaccttctctttcagtctatctgaaa
cctgaagctaataaaactaaggagagagcaaagactgttcaatgtgctttggaatatact
actcttagaagcgttacgcaagctacggaagtatggtatgatcctgaccccatgagcacg
attattgaagaggatattgattttgtaaaatcctactatgagatgccagatgaagaaatt
gctcctgagaaaatctccccatggttgcttcgaatagagttgaatcgtgaaatgatggtg
gataagaaactaagcatggcgaatattgctgagaagatcaaccttgaatttgatgatgat
ttgacttgcatatttaatgatgataatgctgagaagttgatacttcgtatccgtatcatg
aacgatgaagccccaaagggggagttgactgatgaatcagctgaagacgatgtgttcttg
aagaaaatcgagagcaatatgctaactgaaatggctcttcgaggaataccagacatcaac
aaagttttcattaaatgtggtaaagtgaacaagttcgatgagaatgaaggttttaagcca
gagatggagtggatgttggatacagaaggtgtcaatcttttggccgttatgtgtcatgaa
gatgttgatgcgaggaggaccacaagcaaccatttgattgaagttattgaagttcttggg
attgaagcagttcgacgttctctcctagatgaattgcgtgttgttatatcctttgatgga
tcttatgttaattaccgacatcttgccatcctttgtgacaccatgacttatcgtggccac
ttgatggcgattactcgtcatggtattaaccgaaatgatactggaccaatgatgagatgc
tcatttgaagaaactgtggatatcttacttgatgctgcagtgtatgctgaaactgatcac
ttgaggggtgtaactgaaaatataatgttgggtcagctggcccccataggaacaggaggt
tgtgctctgtatctcaacgatgagatgttgaagaatgctattgaactccagttgcctagt
tacattgacggtctggattttggcatgacaccttcccgttctcctatctcaggaactcct
tatcatgaagggatgatgtctcctaattatttgttgagcccaaatctccgcctttcacct
atcagtgatgctcaattttcaccctatgtaggtggaatggctttctctcctacttcatct
ccaggttatagcccatcatctccgggctacagtccatcatcccctggctatagtcccaca
tctcctggttatagtcctacttctccgggatacagccctacctctccgggctacagccca
acatctcccacttacagtcctagttcgccgggttatagcccaactagtcctgcatattct
cctacgagtccatcttattcgcccacctctcccagttacagccctacctctccaagctac
agccccacctctcctagttacagccccacgtcaccaagctacagtcccacttccccaagc
tacagccccacttcgcctgcttacagtcccacttcacctgcttacagtcccacttcccct
gcatatagcccaacttcaccttcctacagccctacatcaccttcttatagtcccacatct
ccttcctacagcccaacatctccgtcttacagtcctacatcaccttcgtacagccccacc
tctccagcatatagccccacctcccctggctatagtcccacatctccgagctatagcccc
acttctcctagctatagtcccacatcacctagttataatcctcaatcagctaaatacagt
ccatcacaggcatactcacccagtagtcctcggttgtctccttcaagtccatatagcccg
acttcaccgaactacagcccaacatcaccatcatattcacctacttctccagcatattct
ccatcaagcccgacctacagtcccagcagtccatataatacaggacccagcccagactac
agccccagttctccacaatacagtccaagtgcaggatactcacctactgctcctgggtat
tctccatcatctactagtcagtacactccacaaacaagtgacaaggatgataggagtaga
aaggatgataggaacaatcgatga
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integrated database retrieval system
