Brachyspira hampsonii: BHAMNSH16_08480
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Entry
BHAMNSH16_08480 CDS
T05655
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bhp
Brachyspira hampsonii
Pathway
bhp03030
DNA replication
bhp03410
Base excision repair
bhp03420
Nucleotide excision repair
bhp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bhp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BHAMNSH16_08480
03410 Base excision repair
BHAMNSH16_08480
03420 Nucleotide excision repair
BHAMNSH16_08480
03430 Mismatch repair
BHAMNSH16_08480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhp03032
]
BHAMNSH16_08480
03400 DNA repair and recombination proteins [BR:
bhp03400
]
BHAMNSH16_08480
Enzymes [BR:
bhp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BHAMNSH16_08480
DNA replication proteins [BR:
bhp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BHAMNSH16_08480
DNA repair and recombination proteins [BR:
bhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BHAMNSH16_08480
NER (nucleotide excision repair)
GGR (global genome repair) factors
BHAMNSH16_08480
MMR (mismatch excision repair)
DNA ligase
BHAMNSH16_08480
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BHAMNSH16_08480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_ligase
STK_08120-like
UPF0758_N
HHH_3
Histone_H2A_C
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ASJ22793
UniProt:
A0A1E5N9U6
LinkDB
All DBs
Position
1943200..1945194
Genome browser
AA seq
664 aa
AA seq
DB search
MNKEEAKQKIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP
TNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLDFDNRMQRELDASNIKYTVENKFDGL
ALELIYEKGKLTVASTRGDGQVGENVTNNVKMMSNVPKSIKEKNKLIVRGEALITKKDFE
VLNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFDLTNEYKSM
EFLSDLGFTVEGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVKYQEKLGFLS
RAPRFAVAFKFKPEEKETLLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSNVTLHNPNEI
KSKDIRIGDSVVVIRSGDVIPKITRVVLEKRPKDSKPFEFPKKCPVCGGDTAVTDGDVIV
RCINEECPSKITRYIEYFVSKPAMNMERIGKEWIAVFTKSGLVKTPADLYKITRDDLFKF
ERMGEKLASYMLESIENSKNTTLKRFIYALGIRQVGETTADLLAKYFTSIDNFKKATIED
LQNIEGIGEISAKSIYDFLHNNEKTLKLIDDLLEAGVNPVFEKVKTVESPLTGKNVVITG
SIEGFTRTSAKEAAERLGATVQSAVSKNTDILIVGEKAGSKLKKAQDLGLEIMEADEFTK
LANR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
attaataaagaagaagctaaacaaaaaatagaacaattaacagaaactattaattatcat
aataaactttattatacagatgataaccctgaaatagaagattatgaatacgataaactt
ttcagagaattagaaaatcttgaaagggagtttccagaattaaaaaaagatgacagccct
acaaataaagttggaggcactatattagaaaagtttgaaaaatttgaacacccgattgca
atgtattctctttctaatgttatgaatgaagaggagtttttggactttgataacagaatg
caaagagaacttgatgctagtaatattaaatatactgtagaaaataaatttgacggactt
gccttagagcttatatatgaaaaaggaaaactcacagttgcaagcacaagaggagacgga
caagttggtgagaatgttactaataatgttaagatgatgagtaatgttcctaaaagcata
aaagagaaaaataaactcattgtaagaggtgaagcattaataacaaaaaaagattttgaa
gtcttaaataaagaaagagaagagcttgaggagataccttttgctaatgcaagaaatgct
gcttctggaggattaagacaattagacagtgcagaaagtaaaaaaagaagattaaagttc
tttgcatatcaaatagctaattataaagattttgatttaactaatgaatataaatcaatg
gagtttttgtcagatttaggctttacagtggaaggtgttcatccaaatattgatgctaaa
aaagtattagaaacttactatgatatacaagaaaaaagaagcaaaatggattatgagatt
gatgggcttgtaataaaagttgatgatgtaaagtatcaggagaagttgggatttttatcg
cgtgctccaagatttgctgtagcttttaaattcaagcctgaagagaaagaaactttatta
aaaaatatagaagtacaagtaggaagaacaggggcattaacgcctgttgctaaattagag
cctgttcaagttggaggcgttaccgtttctaatgttacacttcataaccctaatgaaata
aaatcaaaagacataagaataggagacagtgttgttgtgatacgctccggcgatgttata
cctaagattacaagagtagtattagaaaagcgtcccaaagacagcaagcctttcgagttt
cctaaaaaatgccccgtatgcggaggtgatactgctgtaactgacggcgatgtaatagtg
agatgtattaatgaagagtgtccaagtaagataactagatatatagaatatttcgtttca
aagcctgctatgaatatggagcgaataggtaaagaatggattgctgtatttacaaaaagc
ggacttgttaaaactccggcagacctttataaaataacaagagatgatttatttaagttt
gaaagaatgggcgaaaaattagcaagctacatgcttgaatctattgaaaacagcaaaaac
actacattaaaaagatttatatatgccttgggtattcgtcaggttggagaaactactgcg
gacttactagctaaatatttcacttctatagacaatttcaaaaaagctactattgaagac
ttacaaaatattgaaggcataggagaaatcagtgctaaaagtatttatgattttcttcat
aataatgaaaaaacattaaagttaatagacgatttacttgaagcaggagttaatccggta
tttgaaaaagtaaaaacagtagaatctcctctcactggcaagaatgttgtaataacaggc
tcaatagaaggttttacaaggacttcagcaaaagaggcagcagagagattgggagcaact
gttcagtctgcagtatcaaaaaacactgacattttaatagtaggtgagaaagctggaagc
aaacttaaaaaagctcaggatttaggcttagagataatggaagctgatgagtttacaaag
cttgctaatagataa
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