Bizionia sp. M204: GMA17_01355
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Entry
GMA17_01355 CDS
T08096
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bia
Bizionia sp. M204
Pathway
bia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMA17_01355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bia03021
]
GMA17_01355
03019 Messenger RNA biogenesis [BR:
bia03019
]
GMA17_01355
Transcription machinery [BR:
bia03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GMA17_01355
Messenger RNA biogenesis [BR:
bia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GMA17_01355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA
Mor
AAA_22
DDHD
Motif
Other DBs
NCBI-ProteinID:
UPS90445
LinkDB
All DBs
Position
complement(295515..297179)
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AA seq
554 aa
AA seq
DB search
MFEISQLKAMKLPELQEIAQKLNVPKYRSLKKLDLVYQILDQQAANPKAVKEVVPSEKKS
ESPTEKPVEKAPRKRVQKPARENKPSAERTKEPTAQTSVKDSSKDSTKESSTQKPAPEKS
KTPQKQNKPNPRPKSNQPQKRDDKNGNTRDDKQKDNRTQNQKHDKKNNGNKDTRNRYREP
DFEFDAIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKVGDTVLGNV
RPPKEGEKYFPLIKVIRINGQSPEVVRDRVSFEHLTPLFPQEKFNIAEKQSTISTRIMDL
FSPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQMILLIDERPEEVTDMQRNVR
GEVIASTFDKEAHEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNSVQPASGKI
LSGGVDANALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEFKGTGNMELQ
LDRKISNRRIFPAIDLTSSSTRRDDILLDETTIQRMWVMRKYLADMNPVEAMEFINERFK
QTKNNEEFLISMNG
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatatctcaattaaaagcaatgaagctacctgaattacaggaaatagctcaa
aaactgaacgttccaaaatatcgttcattaaaaaaattagatttagtttatcaaatttta
gaccaacaagctgccaacccaaaagcggtaaaagaagttgttccttctgaaaaaaaatct
gaaagcccaacagaaaaacctgttgaaaaagcacctagaaaacgcgtacagaaacctgct
cgcgaaaacaaacctagtgcagaacgcacaaaagaacctacggctcaaaccagtgtaaaa
gattctagtaaggacagcacaaaagaaagcagcacacaaaaacctgctccagaaaagtct
aaaacgcctcaaaaacaaaacaaacctaacccgagaccaaagtcaaatcagccacagaaa
cgtgatgacaaaaatggcaatacgcgcgatgataagcaaaaggataatcggactcaaaac
cagaaacacgacaaaaagaataacggtaataaagatacacggaatcgctacagagaaccc
gactttgagtttgatgctattatagaaagtgaaggtgttttagacattatgcaagatggt
tacggttttttacggtcatccgattacaactatttatcctctcctgatgatatttatgta
tcccaatcgcaaattcgtttatttggtttaaaagtaggagatacggttttaggaaatgta
agacctccaaaagagggtgaaaaatattttccacttataaaagttattcgcattaatggt
caaagtccagaagtggtaagagaccgcgtttcttttgagcatttaacaccgttatttccg
caagaaaaatttaatatagcagaaaagcaaagtaccatttcaacacgaatcatggatttg
ttttcgcctattggaaaaggtcaacgtggtatgattgtatcacaacctaagactggtaaa
accatgttattaaaggacgtggcaaatgccattgcagccaatcacccagaggtttaccaa
atgattcttttaattgatgaacgtccagaagaagtaacagacatgcaacgcaatgttcgc
ggagaagttattgcctctacctttgataaagaagcgcatgaacacgtaaaaattgctaac
attgttttagaaaaagcaaaacgtttggtagaatgcggacatgatgtggttattttatta
gattccattacacgtttagcacgagcctacaactcggtacaaccagcatctggtaaaata
ttaagtggtggtgtggatgctaatgcgctacacaaaccaaaacgtttctttggtgcggct
cgaaatattgaaaatggtgggtcattaacgataattgctacggcattaacagaaacagga
tctaaaatggatgaagttatctttgaagaatttaaaggtactggtaatatggagctacaa
ttagataggaaaatatcgaatcgtcgtattttccctgccattgatttaacatcttcaagc
acgcgtcgtgatgatattttattagacgaaacaacaatacaaagaatgtgggtaatgcgt
aaatacttagcagatatgaatcctgttgaagctatggagtttatcaacgaacgttttaaa
caaactaaaaataatgaggagtttttaatctctatgaatggttaa
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