Beijerinckia indica: Bind_0382
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Entry
Bind_0382 CDS
T00688
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bid
Beijerinckia indica
Pathway
bid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bind_0382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bid03400
]
Bind_0382
Enzymes [BR:
bid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bind_0382
DNA repair and recombination proteins [BR:
bid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bind_0382
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACB94035
UniProt:
B2IE11
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All DBs
Position
440927..442861
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AA seq
644 aa
AA seq
DB search
MAALDTHHQKRAKASPFLDSLAIQGAKKASLPEFVEPMLASLLTAPPAGKDWIHEIKFDG
YRLQARIEAGRVKLLTRRGLDWTQKFGPKIVTILQALPVETALIDGELVVENSSGVSDFS
ALQAALSEGQFDRFLFYAFDLLYLDGYDLCDLSLSKRRDMLEHLVGSDAGPLRMSQRFEE
EGRLVLQHACRLGLEGIISKRKESVYRSGRGKDWIKSKCSARQEFVIAGYVPSSTSRKAI
GSLVLGVYDGDRLDYVGRVGTGFTMAIAEDLFRKLEAMQIDKRPFAKPLASAEARHVRYV
HPELVAEIEFSGWTADERLRHASFQGLREDKDAREVVREGSRSLTFTAKPQRRRAVFTHS
DRIYWPDEGVTKEGLADYYTEVWRFIAPFIVGRPLALLRCPDGITGPQFFQKHAWKKVYS
HLVLVNDPKEKSEPLLALHDLDGLLELVQSAVLEIHPWQSTLTDWERPDRIIMDLDPGEG
VPWEMVIAAAEEMRDRLQEVGLAAFVKTSGGKGLHVVSPLKPLATWPMVKTFTKTLADAM
AADNPDRFISTSTKSKRQGKIFIDYLRNQRGMTAVAAYSTRARPGASVSVPLDWKELSPN
IGPAYFTVENTPIRLAALTGDPWAEFQAAAVALEEPRSTRRRHG
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggccgctctcgacacccatcaccagaaacgcgcgaaagcatcaccctttttagattct
ctcgccatccagggagcaaaaaaggcctcgctgcccgaatttgtcgagccgatgctggcg
agcctcttaacggccccacccgctggaaaagactggattcatgaaatcaaattcgacggc
tatcgcctgcaggcacggatcgaagccggtcgcgtcaaactgttgacccgtcgtggactg
gattggacgcagaagttcggcccaaagatcgtgactatcttgcaggctttgcccgtggaa
acagctttgatcgatggcgaactcgtggtcgagaacagctccggtgtctctgacttttcc
gcgctgcaggcggccttaagtgaggggcagtttgatcgctttctcttttatgctttcgat
ctgctttatctcgatggctatgatctgtgtgatttgtcactaagcaaacgccgggacatg
ctcgaacatcttgtcggcagcgacgctggtcctctccgcatgagccaacgctttgaagaa
gagggccgtctggtcctgcagcatgcgtgtcgtctcggtctcgaaggcatcatctccaag
cggaaggagagtgtctaccgatccggacgtggcaaggattggatcaaatcgaaatgttcg
gcgcgtcaggaattcgtcatcgccggttatgtgccctcttccacgtcccgcaaggcgatc
ggttcgcttgtgctcggcgtctatgacggagacaggcttgattatgttggccgggtcgga
acaggttttacaatggccatcgccgaggatctctttcgcaagctcgaggcgatgcagatc
gacaaaaggcctttcgcgaaacctctggcttcggccgaagcgcgtcatgtgcgctatgtc
catcccgagcttgttgcggagattgaattttctggatggaccgctgacgaacgtcttcgg
cacgcttcgtttcaagggctgagggaagacaaagatgctcgggaggttgtgcgcgagggg
tcaaggagcctaaccttcacggcaaagccacaacgacgccgggccgtattcacgcattca
gaccgtatctattggccggatgagggtgtgaccaaggaaggcctggcggattattatacg
gaggtctggcggttcatcgctccctttatcgttgggcgccctttggctctgcttcgttgt
ccggatggcattactggaccgcaattctttcaaaaacatgcctggaagaaggtctattcc
catctggttctggtcaacgatcctaaagagaaatcggagcctctcctcgcacttcatgat
ctcgatggtttactcgagcttgtgcaatcagctgtcctggagattcatccctggcaatcc
acccttactgactgggaacggccggatcgaatcatcatggatcttgaccctggtgaaggc
gttccatgggaaatggttatcgcggccgccgaggagatgcgtgatcgtttacaggaagtt
ggcctcgcggcctttgtcaaaacatcgggtggcaaaggcttgcatgtcgtctcgcctcta
aaaccgctggcgacttggcccatggtgaagactttcaccaaaaccctggctgatgccatg
gccgctgacaatcctgaccgtttcatctcaacgagcaccaagagcaagcggcaaggcaag
attttcatcgattatctgcgcaatcaacgagggatgaccgctgttgctgcttattcgacc
agggcgcggcctggagcttctgtgtcggtgcctttggactggaaggagttgagcccaaat
atcggaccagcctattttacggtggagaatacaccgatccgcttggctgcactcacggga
gatccatgggcggagtttcaggcggctgcggttgctctcgaagagccaagatcgacgaga
cgccgacatggctag
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