Beijerinckia indica: Bind_2226
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Entry
Bind_2226 CDS
T00688
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bid
Beijerinckia indica
Pathway
bid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bind_2226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bid03400
]
Bind_2226
Enzymes [BR:
bid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bind_2226
DNA repair and recombination proteins [BR:
bid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bind_2226
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ACB95844
UniProt:
B2IGT3
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All DBs
Position
2552635..2553534
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AA seq
299 aa
AA seq
DB search
MGVALTHPYREFWPDADDGKAVTKEDLAYYFETVGAWMMPHIEGRPLSILRAPEGLGGQL
FFQRHAEPHTDSFLKTMPLDGEAKPYFTVDSVEGLISLAQIAALELHPTNGRPGEPEVPG
RLVFDLDPGPGVAFSIVTKAAHQLRDRLEVLNLVPFCKTTGGKGLHVVTPLTAPTTASSD
WAMAKACAEEICARLAAEEPDLYIVNMAKKHRQHHIFLDYLRNDRMATAVAPLSPRAKPG
AHVSMPLTWDQVTDDLDPKTFTLRTAPDLLGKAWADYHKAERPLDEALRRLGKLNFANG
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttgccttaactcacccctatagggaattctggcccgatgccgacgacggcaaa
gcggtcacgaaagaggatctcgcctattatttcgagaccgtgggcgcgtggatgatgccc
cacatagaaggacggcccctttcgatcttgcgcgcgccggaagggcttggcgggcaactt
ttcttccaacgccatgccgaaccccatacggactcattcctcaagaccatgccgctcgat
ggcgaagctaaaccctatttcacagtggattcggtcgaagggctgatttccctggcgcag
atcgccgcgctcgaactgcatccgaccaatggccggcccggcgagcctgaagtcccagga
cggctggtcttcgatcttgacccgggacccggcgtggccttctccatcgtgaccaaagcg
gcgcatcaattacgcgaccgcctggaggttttgaacctcgttcctttttgcaagacaacc
ggcggcaagggtctgcatgtcgtgacccctttgacggcgcccacaacagcgtcttcggac
tgggccatggcgaaagcctgcgcggaggaaatctgcgcccgcctcgcggccgaggaaccc
gatctctacatcgtcaatatggcgaagaagcaccgccaacatcatatctttctcgattat
ctccgcaacgatcggatggcgaccgccgtggcgcccctttcgccccgggcgaagcctggc
gctcatgtctccatgccgctgacctgggatcaggtgaccgacgatctcgatcccaaaacg
tttaccttgcgcaccgccccggacctcttgggcaaggcctgggcggattaccataaggcc
gaacgtcccctggatgaggctttgagacgcctcggcaagctcaacttcgcgaatggttaa
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