Bacillus inaquosorum: AN935_03400
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Entry
AN935_03400 CDS
T07179
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
biq
Bacillus inaquosorum
Pathway
biq03030
DNA replication
biq03410
Base excision repair
biq03420
Nucleotide excision repair
biq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
biq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AN935_03400 (ligA)
03410 Base excision repair
AN935_03400 (ligA)
03420 Nucleotide excision repair
AN935_03400 (ligA)
03430 Mismatch repair
AN935_03400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
biq03032
]
AN935_03400 (ligA)
03400 DNA repair and recombination proteins [BR:
biq03400
]
AN935_03400 (ligA)
Enzymes [BR:
biq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AN935_03400 (ligA)
DNA replication proteins [BR:
biq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AN935_03400 (ligA)
DNA repair and recombination proteins [BR:
biq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AN935_03400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AN935_03400 (ligA)
MMR (mismatch excision repair)
DNA ligase
AN935_03400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AN935_03400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
HNOB
zf-NADH-PPase
5_3_exonuc
RNA_pol_A_CTD
HHH_3
zf-IS66
HHH_8
zf-tcix
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AMA51356
LinkDB
All DBs
Position
662424..664430
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKQRADELRRTINKYSHEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRDLSIEVRGEAYMPKRSFET
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDEIGFKTNQERKKCGSIEEVIALIDEFQAKRADLPYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFGENLVRNVADLYKLTKEQVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEE
LLAVDEIGEKMADAVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEQLSRNDAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaagcagcgggcagacgaactgcgccgcaccatcaacaagtat
agccatgaatattacaccttagatgaaccgagcgtccctgatgccgaatacgacagattg
atgcaggagctgattgcgatcgaggaggagcatccagacctcagaacgcctgactctcct
acgcagcgtgtcggcggagccgtgcttgaagcgtttcagaaagtcacccacggcacgccg
atgctcagtttgggcaacgcctttaacgcagatgatctccgtgatttcgaccgccgggtg
cgccaggccgtcggtgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggggccacaaggggtgacggaacg
acgggagaggatattacggagaatctgaagacgatccgcaatattccgctcaaaatgaaa
cgtgatctgtcaatcgaagtgcgcggcgaggcgtatatgccaaagcgttcgtttgaaacg
ctcaatgaggaacggatcaaaaacgaagaagaaccgttcgccaatccgcgaaatgccgcc
gcgggatcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgatatcttc
gtctacagtatagcggagcttgatgagatgggtgtggagacgcaaagccaggggcttgat
tttctcgacgaaatcggatttaaaacgaaccaggaacgaaaaaaatgcggcagcatagaa
gaagtcattgcgctgatcgatgagtttcaggctaagcgcgctgaccttccgtatgaaatt
gacggcatcgtgattaaggtagattcccttgatcagcaggaagagcttggttttacggcg
aaaagcccgcgctgggccatcgcgtataaatttcctgctgaagaggtcgtgacaaagctt
ctcgatatcgaattaaatgtcggcagaacgggtgtgattacgccgactgcgattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacattcggatattggataaggtcgtcgtcaaaaaagcgggcgatatcatt
ccggaagtcgtgaacgtcctcgttgaacagcgcacaggagaagaaaaggaattcagcatg
ccgacggaatgtcctgaatgcggaagcgaactcgtccgtatcgaaggagaagtggcactt
cgctgcattaaccctgaatgtccggcgcaaatccgagaagggctgatccatttcgtttcc
cgcaatgccatgaacattgacgggcttggcgaacgagtgatcacacagctgtttggggag
aacctcgtccgcaatgtcgcggatttgtataagctgacgaaggaacaggtcattcagctc
gaacgcatgggcgaaaagtccacagaaaacctgatcagctccatccaaaaatcaaaagaa
aattcgttagagcgcttgctattcggactcggcatccgctttatcggttcaaaggctgca
aagacgctcgccatgcattttgaaagcctggagaacctgaaaaaagcctctaaagaggaa
cttctcgcggtagatgagatcggtgaaaaaatggctgacgcggtcatcacctattttcat
aaagaagaaatgcttgaactcttgaatgaacttcaggagctgggcgtaaacacactctac
aaaggcccgaaaaaagtaaaagcagaggacagcgattcttactttgccggtaaaacaatt
gttctgacaggaaagctggaacaactgtcaagaaacgatgccaaagcgcaaatcgaagcg
ctcggcggcaagctgactggcagcgtcagcaaaaacacagacttggtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcgcaagagctgaacattgaagtatggaatgaagaa
cagttaatgggagagctaaagaaataa
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