Bacillus spizizenii: BIS30_13920
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Entry
BIS30_13920 CDS
T05513
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bit
Bacillus spizizenii
Pathway
bit03030
DNA replication
bit03410
Base excision repair
bit03420
Nucleotide excision repair
bit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BIS30_13920 (ligA)
03410 Base excision repair
BIS30_13920 (ligA)
03420 Nucleotide excision repair
BIS30_13920 (ligA)
03430 Mismatch repair
BIS30_13920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bit03032
]
BIS30_13920 (ligA)
03400 DNA repair and recombination proteins [BR:
bit03400
]
BIS30_13920 (ligA)
Enzymes [BR:
bit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BIS30_13920 (ligA)
DNA replication proteins [BR:
bit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BIS30_13920 (ligA)
DNA repair and recombination proteins [BR:
bit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BIS30_13920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BIS30_13920 (ligA)
MMR (mismatch excision repair)
DNA ligase
BIS30_13920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BIS30_13920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
zf-NADH-PPase
5_3_exonuc
HHH_8
zf-IS66
HNOB
HHH_3
zf-tcix
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AJW86154
LinkDB
All DBs
Position
2663563..2665569
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKQRADELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRDLSIEVRGEAYMPKRSFET
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDEIGFKTNQERKKCGSIEEVIALIDEFQAKRADLPYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFEENLVRNVADLYKLTKEQVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEE
LLAIDEIGEKMADAVITYFHKEEMLDLLNELQELGVNTHYKGPKKVKAEESDSYFAGKTI
VLTGKLEELSRNDAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaagcagcgggcagacgaactgcgccgcaccatcaacaagtat
agctatgaatattacaccttagatgaaccgagcgtccctgatgccgaatacgacagattg
atgcaggagctgatagcgatcgaggaggagcatccagacctcagaacgccggactctcct
acgcagcgtgtcggcggagccgtgcttgaagcgtttcagaaagtcactcacggcacgcca
atgctcagtttgggcaacgcctttaatgacgatgatcttcgtgatttcgaccgccgggtg
cgccaggccgtcggcgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggagccacaagaggtgacggaacg
acgggagaggatattacggagaacctgaagacgatccgcaatattccgctcaaaatgaaa
cgtgatctgtcgatcgaagtgcgcggcgaggcgtatatgccgaagcgttcgtttgaaacg
ctcaatgaggaacggatcaaaaacgaagaagaaccgtttgccaatccgcgaaatgccgcc
gcgggatcactcagacagctcgatccgaaaattgcagcgaaacgaaacctcgatatcttc
gtctacagtatagcggagcttgatgagatgggtgtggagacgcaaagccaagggcttgat
tttctcgacgaaatcggatttaaaacgaaccaggaacgaaaaaaatgcggcagcatagaa
gaagttattgcactgatcgatgagtttcaggctaaacgcgctgacctcccgtatgaaatt
gacggcatcgtgattaaagttgattcccttgatcagcaggaggagctcggttttacggcg
aaaagcccacgctgggccatcgcgtataaatttcctgctgaagaggtcgtgacaaaactt
ctcgacatcgaattaaatgtcggcagaacgggtgtgattacgccgaccgccattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggatattcggatattagataaggttgtcgtcaaaaaagcgggcgatatcatt
ccggaagtcgtgaacgtcctcgttgaacagcgcacaggagaagaaaaggaattcagcatg
ccgacggaatgccctgaatgcgggagtgaactcgtccgcatcgaaggagaagtggcgctt
cgctgcattaatcctgaatgcccggcgcaaatccgggaaggactgatccatttcgtttcc
cgcaatgccatgaacattgacgggcttggcgaacgagtgatcacacagctgtttgaggag
aaccttgtccgcaatgtggcggatttgtataagctgacgaaggaacaggttatccagctc
gaacgcatgggcgaaaaatctactgaaaatctgatcagctccattcaaaagtccaaagaa
aattcgttagagcgcttgctatttggactcggcatccgctttatcggttcaaaggctgca
aagacgcttgccatgcattttgaaagcttggagaacctgaaaaaagcttcaaaagaggag
cttctcgcgatcgatgaaatcggtgaaaaaatggctgatgcggtcatcacttattttcat
aaagaagaaatgcttgatctcttgaatgaacttcaggagctgggcgtaaacacacactac
aaaggcccgaaaaaagtaaaagcagaggaaagcgattcttactttgccggtaaaacaatt
gttctgacaggaaagctggaagaactgtcaagaaacgatgccaaagcgcaaatcgaagcg
ctaggcggcaagctgactggaagcgtcagcaaaaacacagacttggtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcacaagagctgaacattgaagtatggaatgaagaa
cagttaatgggagagctaaagaaataa
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integrated database retrieval system
