Bos indicus (zebu cattle): 109554002
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Entry
109554002 CDS
T04792
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109554002 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
biu03021
]
109554002 (PCF11)
03019 Messenger RNA biogenesis [BR:
biu03019
]
109554002 (PCF11)
Transcription machinery [BR:
biu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109554002 (PCF11)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109554002 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CFIA_Pcf11
CID
SHOCT
Motif
Other DBs
NCBI-GeneID:
109554002
NCBI-ProteinID:
XP_019809875
UniProt:
A0A6P5BIV5
LinkDB
All DBs
Position
29:complement(13078287..13099099)
Genome browser
AA seq
1598 aa
AA seq
DB search
TSQFLFITQAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSL
FKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSVSFNIN
DTYQKDALKIMLECFHSSNMNIYFVFQAVSLSVQQETSSLGPGSAPSKLHVSQIPPMAVK
APHQVPVQPEKSRPGPSLQIPDTKGTNRDPRLNRMSQHSSHGKDQSHRKEFLMNTLNQSD
IKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKN
QEAESTRVSDMSKRDPRLKKHLQDKTDSKDDDTKDKRKTAEKKDKDEHMKSSEHRLVGSR
NKIINGIVQKQDTITEESEKPGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRR
QRSMSPTSTPKAGKIRQSGVKQSHMEEFTPSREERSAKRSTKQDVRDPRRIKKTEEERPQ
ETAGQHSTKSSTEPKENVENWPSSKSTKRWKSGWEENKSLQQGDEHSKAPHLRHRESWSS
TKGILSPRAPKPQHRLSVDANLQIPKELTVASKRELLQKTSERLASGEITQDEFLVVVHQ
IRQLFQYQEGKHRCSVRDSPTEENKGGLKKKPLLSDAELTYYEHKAKLKRTQVQHSFPRL
DLLDPDIFDYPLTDALLSGIECEPSKSKHASRNSGAQFDRKEQFSERARRLSPISGSRTY
AENLSPHEGRRRHDEQVSSKGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLD
TNQRLTALAEDRPLYDGPSRPSVARDGPAKMIFEGPNKLSPRIDGPPAPGSLRFDGSPGQ
MGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFE
GSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFENPRGQPVGGLRF
EGGHGPSGAAMRFDGPHGQPSGGIRFEGPLLQQGVGMRFEGPHGQSVAGMRFEGQHNQLG
GNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHPL
RFEGQPGQSSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQQVQPRFDGVPQRFEGPQ
HQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQM
FDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGNFGNLPAPITVGNIQAS
QQVLTGVSQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPDNHLSQVDVNELFSKLL
KTGILKLSQPDSATTQVNEVAAQPPAEEEEDQNEDQDVPDLTNFTIEELKQRYDSVINRL
YTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEI
ADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEE
EEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEP
CESPKVKEERTDTPPACTEESIATATEIKTENDTVESV
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
acttctcagtttctttttattactcaggctccctcctcagagaagcttcctgttatgtac
cttatggattctatcgtgaaaaatgttggaagagagtatctcactgcctttactaaaaat
ctagttgcaacatttatttgtgtgtttgaaaaggtggatgaaaatactagaaaaagttta
tttaaattacgttccacatgggatgaaatatttcctttgaagaaactttatgccctggat
gtcagagtcaattcgttagatcctgcttggcctattaaacctctgccccccaatgtgaat
acatctagcatccatgtgaatcctaagtttttaaataaatcggtaagttttaacataaat
gatacataccaaaaggatgcactgaaaattatgttggaatgttttcacagctctaacatg
aacatttattttgtatttcaggcagtttcccttagtgttcagcaggagacatccagctta
ggtcctggatctgcaccatccaaattacatgtttcacagattccccctatggcagttaaa
gctccccatcaggttcctgtgcagcctgagaaaagtcgtccaggtccatccttacaaatt
ccagatacgaaaggaactaaccgggatccccgtcttaataggatgagtcaacattcttct
catggaaaagatcaaagtcacaggaaagaattcctaatgaacacactgaaccaatctgat
attaagacmagtaaaactgtaccctctgaaaaactaaattcatccaagcaagaaaaaagt
aaatcaggtgaaaaaataaccaagaaagaacttgaccaattggattctaaatccaaatct
aaatctaaatcaccgtcacctttgaaaaataaattatcccacacaaaagacttgaaaaat
caagaagctgaaagtacaagggtgtctgatatgagcaagagagatccaagattaaaaaaa
catcttcaggataagactgatagcaaagatgatgatacaaaggacaagagaaaaackgca
gaaaaaaaggataaagatgagcacatgaaatcatctgaacacagactggtgggaagtaga
aataaaatcataaatggcattgtacaaaaacaggatacaataacggaagaatcrgaaaaa
ccggggacaaaaccagggagatcgagtactagaaagcgatcaagatcacgatcacccaag
tctcggtcaccaattatacattctcccaagagaagagacaggcggtcacccaaacgaagg
caaaggagtatgtctccaacctcaacccccaaagctgggaagattcgccagtcaggagtt
aaacagtcacacatggaggagtttacaccttccagggaagaaagaagtgcaaagagaagt
actaaacaggatgttcgagatccaaggcggataaaaaagactgaagaggaacgaccccaa
gagactgctggtcaacattctaccaagtcaagcactgaaccaaaggagaatgtagaaaat
tggccaagttccaagtctaccaaaaggtggaaatccggttgggaagaaaataaaagttta
caacagggtgatgaacatagtaaagctcctcatctaaggcatagggagagctggtcaagc
actaaaggaatcttgtcacctcgagccccaaagccgcagcatcgattaagtgtagatgcc
aatcttcagattcctaaagagttaactgttgcaagcaaaagagaattacttcaaaagacg
agtgaacgtttagcatctggtgaaattacacaggatgagttccttgttgttgtgcatcaa
atacgacagctatttcagtatcaagaaggtaaacatagatgcagtgtacgggatagtcct
acagaagaaaataaaggtggattaaaaaagaaacctctcttatctgatgctgaattaacc
tactatgaacataaagcaaaactgaaaaggacacaggttcagcattcatttccaagactt
gatctcttagatcctgatatttttgactaccctttgactgatgccttgttgtctggaata
gaatgtgagccatccaaaagtaaacatgcaagtaggaatagtggagcacagtttgacaga
aaagaacaatttagtgaaagagcaagacgtctttctcctatatctgggagtcgtacttat
gctgagaatctttcaccccatgagggccggagaagacatgacgagcaagtctcttctaaa
ggtgtacgagaagagcagagatcaccattcaatgatcgttttccacttaaacgacctaga
tatgaagattcagataaaccatttgtagatagccctgcatcaagattcgccggccttgat
acaaatcagcgacttacggctttagctgaagatagaccgttatacgatggacctagcagg
ccatcagtagcgagagatggcccagccaagatgatttttgaaggacctaataaattaagc
cctagaattgatggacctcctgcaccaggttctcttcggtttgatgggtcaccaggacag
atggggggaggkggycctttgagatttgaaggaccacaaggccagttaggaggtggatgt
cctttgagatttgaaggtcctccaggaccagtcgggacacctctgcgatttgaggggccg
attggtcaagcaggaggaggtggcttccgatttgaaggttcccctggtctgaggtttgag
ggatctgcaggtggtttgcgatttgaaggaccagggggccagcctgtgggcggtctcagg
tttgaaggacatcggggtcaacctgtgggtggtctgaggtttgagggacctcatggtcag
cctgtgggtggacttcgatttgagaatcctcgaggtcagccagtaggtggacttagattt
gagggaggtcatggtccatcaggggctgcaatgaggtttgatggacctcatggtcagcca
tcaggtgggatcagatttgagggcccattgttacagcagggagttggaatgaggtttgag
ggcccccatggtcagtcagtagctggtatgaggtttgaaggacaacataatcagcttggt
gggaaccttaggtttgagggtccacatggtcaaccaggggttgggatcaggtttgaagga
cctttagtccaacaaggaggtggaatgaggtttgagggtccttcggtcccaggaggtggc
ctgagaatcgaaggacctctgggtcaaggcggtccgaggtttgaaggttgtcatccttta
aggtttgaagggcagccaggtcagtcatcactcctgccaagatttgatggattacacggt
cagccaggtcctagatttgaaagaactggtcagccaggcccacagaggtttgatggacct
cctggacagcaggttcaaccaagattygatggtgtgcctcagagatttgaaggaccacaa
caccagcaagcatcaaggtttgatattcctcttggtcttcaaggcacacgatttgacaat
catccttcacagaggcttgaatcagtatctttcaatcagactggcccatayaatgatcca
cctggcaatgcttttaatgccccatcccaaggactacagttccaaagacacgaacaaatg
tttgactcacctcaaggaccaaatttcaatggaccacatggccctggaaaccagagtttt
tccaatccccttaacagagcttctggacactattttgatgagaagaatcttcagagttct
caatttggaaactttggcaatttacctgctccaataacagtaggaaatattcaggcatct
caacaggttctgactggtgtttctcagccagtagcatttggccaaggacagcaatttttg
ccagttcatccacaaaatcctggagcatttgttcagaatccttcaggagccctgcctaag
gcttatcctgataatcatctcagtcaggtggatgtaaatgaattattttcaaaactgcta
aaaacaggaattctcaaattgtcccagcctgattcagctacaacacaagtaaatgaagtt
gctgctcagccccctgctgaggaggaggaagatcaaaatgaagatcaagatgttccagat
cttaccaattttacaattgaagaattaaaacaacgttatgatagtgttataaatcgactg
tacactggtattcagtgttattcctgtggaatgaggtttacaacatcacagacagatgta
tacgcagatcacttggactggcattatcgacaaaatagaactgaaaaagatgtaagcaga
aaagtcactcacaggcgttggtactacagtttaacagactggatagaatttgaggaaata
gctgatctcgaagaacgtgcaaagagccagttttttgaaaaggtacacgaagaagttgta
ctcaaaactcaggaggctgctaaagaaaaggagttccaaagtgtaccggctggaccagca
ggagcagtcgagagttgtgaaatctgtcaagagcaatttgaacagtactgggatgaagag
gaggaggaatggcatttaaaaaatgctattagagtagatggaaagatttatcatccatca
tgttatgaagattatcaaaatacatcttcatttgattgtacaccatctcccagcaagaca
ccagttgaaaatcccttgaacattatgttgaacattgtcaaaaacgaattgcaggaaccc
tgtgaaagtcccaaagttaaggaagaacgaactgatactccaccagcttgcacagaggaa
agcatagcaacagccactgaaattaaaacagaaaatgatacagtcgagtcagtttaa
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integrated database retrieval system
