Bos indicus (zebu cattle): 109556070
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Entry
109556070 CDS
T04792
Symbol
SCAF4
Name
(RefSeq) splicing factor, arginine/serine-rich 15 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
biu
Bos indicus (zebu cattle)
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
biu03021
]
109556070 (SCAF4)
03041 Spliceosome [BR:
biu03041
]
109556070 (SCAF4)
Transcription machinery [BR:
biu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109556070 (SCAF4)
Spliceosome [BR:
biu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
109556070 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
109556070
NCBI-ProteinID:
XP_019812691
UniProt:
A0A6P5B737
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All DBs
Position
1:2871084..2933004
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AA seq
1143 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVTENVTNNEGSPPPPVKVSSEPPQATTNSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDAVAASATTTPAPAAVVPTTP
ATAAAPSVAAPTASPPQAPFGFPGDGMPQPTYAQHQNMDQFPPRMMAVQQDPVHHQVPLP
PNGQMPGFGLLPTPPFPPMAQPVIPPTPPVQQPFQTSFQAQNEPLTQKAHQEMEVEQPCI
QEPKRHISDHRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQER
RDREKERERRQKGLPQIKAETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIP
PRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTY
IPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPTPKP
LPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPP
PPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSI
GNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIG
LQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPP
PHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQPPPQQQQQQQQQPPAQPPPQ
QPPPAQQPPPAQQQPQPFRNDSRQQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRE
NSNRERREWGRRSPDRDRHRDLEDRNRRSSGHRDRERDSRDRESRREKEENRGKEKPEVA
DRAGSNKTVEPPISQAGNVDTVSELPKGEPGPAVAKPSEELPAEATSSVNPEKDPGSAAE
APR
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaagagctcttttcacttatggatatgaaacctccc
atctctcgagccaagatgattctcatcacgaaagctgctattaaagctataaagctttat
aagcatgtggttcaaatagtagaaaagttcatcaaaaagtgtaaaccagaatacaaggtt
ccaggattatatgtaatcgactcaattgtgcgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataactgccacattccaatatctgtat
ctttgtccatctgaagataagagtaaaatagttcgtgtattgaacctttggcaaaaaaat
ggagtattcaaaattgaaattattcagcctcttttggacatggcagcaggaaccagtaat
gctgctccagtaacagaaaatgttactaataatgaaggttcacctccacctccagttaaa
gtttcttctgaacctccacaagccactacaaactctgtaccaactgtaccgcagttgccc
agctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaacagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctcccgccattgacaat
gccgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgaacaaaaagctgctttccccccacctgaacaaaaaactgcatttgacaagaagcta
cttgatagatttgattatgatgatgagccagaagcagtggaagaatccaagaaagaagat
gctgttgccgcctcggccaccacaacacctgctcctgccgctgttgtgcccactacgccg
gccaccgccgccgcaccttctgtggctgcgcccactgcctctcctccacaggcacccttt
gggtttcctggagatggcatgccgcaaccaacatatgcccaacatcagaacatggatcag
tttccgcctcgaatgatggcagtgcagcaggatccagtgcaccatcaggttccacttcct
cctaatggacagatgccaggctttggccttcttcctacacctccgtttcctcccatggct
cagcccgtgattcctccaactccacctgtgcagcagcccttccaaacttcctttcaggca
caaaatgagccacttacacagaaggcacatcaggaaatggaagtagaacaaccttgtatt
caagagcctaagcggcacatatctgatcacagaaagtcaagatctagatcagcatccagg
tcaccgaaaaggagacgatctcgatctggttctagatctcgaaggtctcggcatcgacgt
tctcgatctaggtccagagatagacgccgacattctcctcggtctcgatcccaagaaaga
cgagatcgagaaaaggaaagagaacgccgacagaaaggccttcctcagatcaaagcagaa
accgcaagtgtttgtagtactacactctgggtgggacagctggacaaaaggactactcag
caggatgttgccagtcttttagaagagtttggtccaattgaatcaattaatatgattcct
cccagaggttgtgcctatattgttatggttcataggcaagatgcctatcgtgccctgcaa
aaactgagccgagggaactacaaagtgaaccagaaatccataaagattgcctgggcccta
aacaaaggaataaaagcagattataagcagtattgggatgtagaacttggtgttacttat
attccatgggacaaagtcaagcctgaagaactggagagtttctgtgaaggaggaatgttg
gacagtgatacacttaatccagattggaagggaattcccaagaagcatgaaaacgaagtt
gctcaaaatggaggagctgaaacctcacacacagagccagtgtcacccacacctaagcct
ctgcctgtgcctgtgcctcctattcctgttcccgcaccgataacagtaccgcctccacag
gtcccaccacatcagccaggacctcctgtagttggtgctctccagccacctgctttcacg
cctcctttgggaattccacctccaggctttgggcctggtgttcctcctcctccacctccg
ccaccgtttttgcgcccaggattcaacccaatgcatctgccaccaggttttcttccccct
ggacccccacctcctataactccaccagtatccattcctcctcctcacactccaccaata
agcatcccaaactctactatcgctggtataaatgaagacactacaaaagacttatctatt
ggaaatcccattccaacagtggtgtctggggctagaggaaacgccgagtctggtgacagt
gtgaaaatgtatggctctgctgtgccacctgctgcacccacgaatctgcctacccctcct
gtaacccagcctgtttcacttcttggtacccaaggagttgcaccaggtcccgtcattggg
ctccaggccccgtccactggtctcctcggtgcccgacctggcctgatcccactccagcgc
ccgccaggaatgcctccacctcacttacagcggtttcccttgatgccacctcggcccatg
cctccacacatgatgcaccgaggcccaccaccaggcccggggggcttcggaatgcctcca
cctcatggaatgaaaggcccattcccaccccacggccccttcgtcaggcctggcgggatg
ccagggctcgggggcccggggccgggcccggggggtcctgaggaccgagacggaaggcag
ccgccgccacagcagcaacagcagcaacagcagcagccacctgcacagccgccaccgcag
cagccgccgccagcccagcagccgccgccggctcagcagcagccacagccgttcagaaat
gacagcaggcagcagcagttcaattcaggtagagaccaagaaaggtttggaagaagatcc
tttggaaatagggtggagaatgaccgggaacggtacgggaaccgtaacgatgatcgagag
aatagtaaccgtgagaggagagagtggggaaggaggagccccgaccgggacaggcacaga
gacttggaagacaggaatagacgttctagtgggcatcgagacagagagagagattctaga
gatagagagtctcgtagagagaaggaagaaaaccgaggcaaggagaagcccgaggtggca
gacagggcaggcagtaacaagaccgtggaacctcccattagccaagcgggaaacgtagac
actgtttcagaacttcctaagggggagcctgggcctgcagtcgcaaagccttctgaagag
ttacctgctgaggctacctcatccgtcaaccccgagaaggaccccggctcagcagcagag
gctcctcgttaa
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