Bos indicus (zebu cattle): 109557665
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Entry
109557665 CDS
T04792
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109557665 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
biu03000
]
109557665 (CNOT4)
03019 Messenger RNA biogenesis [BR:
biu03019
]
109557665 (CNOT4)
04121 Ubiquitin system [BR:
biu04121
]
109557665 (CNOT4)
Enzymes [BR:
biu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109557665 (CNOT4)
Transcription factors [BR:
biu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109557665 (CNOT4)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109557665 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109557665 (CNOT4)
Ubiquitin system [BR:
biu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109557665 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Rtf2
Nup35_RRM_2
DZR_2
zf-CCCH_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
109557665
NCBI-ProteinID:
XP_019814694
UniProt:
A0A6P5BR36
LinkDB
All DBs
Position
4:complement(102738527..102892532)
Genome browser
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSTPQT
SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
IADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPASNTATTDSPSW
DRPGSWTDPAIITGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPTAPPSQTHHSAPF
STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgacgcaaaggaagaccctgtggaatgtcctctttgcatggagccc
ttggagatagatgatatcaactttttcccttgcacctgtggctaccagatttgccgcttt
tgttggcatcgaattcgcactgatgaaaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttataaaccactctcccaggaagaactgcaaaggataaagaat
gagaaaaaacagaaacaaaatgagagaaaacagaaaatatcagaaaatcgcaaacatttg
gctagtgtacgtgttgtacaaaaaaacctcgtctttgttgtaggtctgtctcagcgccta
gcagacccagaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccaagtgccagtgcttat
gtaacctatatacggtcggaagatgctctcagagccatacagtgtgttaacaatgtggtg
gtggatggcagaacacttaaggcatctctaggtacaacaaaatactgcagttacttctta
aagaatatgcagtgtccaaagcctgactgcatgtacctacatgaactgggggatgaggcg
gccagcttcacaaaagaggaaatgcaggcgggtaaacaccaagaatatgaacagaaactc
cttcaggaattatataaattaaaccccaatttccttcaactgtctacgggttcagttgat
aagaataagaacaaagtgacaccactgcagaggtatgatacccctattgacaaaccttct
gattctctcagcatagggaatggtgataattctcagcagatatctaacagtgatacacct
tcaccacctcctggtttatcaaaatccaatccagtcatccccatcagttcatccaatcac
agtgcacggtctccttttgaaggagcagtaactgagtcacagtcgttattctcagataat
tttcgccatcccaaccctatcccaagtgggcttcctcctttccccagcaccccacagact
tccagtgactggcctacagcaccagagccacagagcctcttcacatcagaaacaatccca
gtatcatcctctacagactggcaagcagcgtttggctttggttcttctaaacaaccagag
gatgacttgggttttgatccctttgatgtcactcgaaaagccttagcagacttgattgaa
aaggaactgtcagtccaagaccagccttccctttcgcccacatctcttcagaactcctcg
tcacacactacaactgccaaaggtccaggctctggattcctgcatcctgctgcgcctaca
aatgccaactctctgaatagtaccttttccgtcttgccacagaggttccctcaatttcag
cagcaccgagcrgtttataattcattcagttttccaggccaggcagcccgctatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatccct
atagcagacaacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctacccaacattaacatcaactttggtggactgcccaattcttcctccccc
tccaacgccaaccacagtgcaccagcctccaacactgccaccaccgacagcccgagttgg
gaccgccctggcagctggacagacccagccatcatcacaggtattccagcatcttcagga
aacagtttagactctcttcaagatgacaatcctccacactggctaaaatcccttcaggcc
ctcacagagatggacggccccactgcccctccgtcacaaacccaccacagcgcccccttc
agcacacagatccctctgcacagagccagttggaatccctaccctcctccttcaaaccct
tccagctttcactccccacccccaggctttcagacagccttcagaccccccagcaaaacc
cccacagatttattacagagttcaacactggaccgccactag
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