Bos indicus (zebu cattle): 109559242
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Entry
109559242 CDS
T04792
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03015
mRNA surveillance pathway
biu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109559242 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109559242 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109559242 (CPSF6)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
109559242 (CPSF6)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
109559242
NCBI-ProteinID:
XP_019816397
UniProt:
A0A6P5BT47
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Position
5:complement(48126689..48151070)
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AA seq
537 aa
AA seq
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MDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEI
KFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSR
KTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPG
NLIKHLVKGTRPLFLETRIPWHMGHSIEELPIFGLKAGQTPPRPPLGPPGPPGPPGPPPP
GQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQG
PPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDS
RGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSD
ASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERS
RERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggatactctcccaccaactgttggtgatgacgtgggtaaaggagcagcaccaaatgtt
gtctatacatatacgggaaagagaattgcattgtatattgggaatctaacatggtggaca
acagatgaagacttaactgaagcagttcattctttgggagtaaatgatattttggagata
aagttttttgaaaatcgggcaaatggccagtcaaaggggtttgcccttgttggtgttgga
tctgaagcatcctcaaaaaagttaatggatctgttgcctaagagagagcttcatggtcag
aatcctgttgtaacgccatgcaataaacagttcctgagtcaatttgaaatgcagtccagg
aaaactacacaatcaggacaaatgtctggggaaggtaaagctggtcctccgggaggcagt
tcacgtgcagcatttccacaaggtggtagaggacggggccgttttccaggggctgttcct
ggtggggacagatttcctgggccagcaggaccaggagggccacctccaccttttccagga
aatttgatcaagcatcttgttaaaggaactcggcctttgttcctggaaactaggattcca
tggcatatggggcacagcatagaggaattacccatttttggcctaaaagctggacagact
ccaccacgcccacccttaggtcctccaggcccacccggtccgccaggtcctccacctcct
ggtcaggttctgcctcctcctttagctgggcctcctaatcggggagatcgccctccacca
ccagttctttttcctggacagccttttgggcagcctccattgggtccgcttcctcctggt
cctccacctccagttccaggctacggcccccctcctggtccaccacctccacaacaggga
ccacctccacctccaggcccctttccacctcgcccacctggccctcttgggccacccctt
acactcgctcctcctccgcatcttcctggaccacctccaggggccccaccgccagctcca
catgtgaacccagctttctttcctccaccaactaacagcggcatgcctacatcagatagc
cgaggcccaccaccaacagatccatatggccggcctccgccatatgataggggtgactat
gggcctcctgggagggaaatggatactgcaagaacgccattgagtgaagctgagtttgaa
gaaatcatgaatagaaatagggcaatctcaagcagtgctatttcaagagctgtgtctgat
gccagtgctggtgattatgggagtgctattgagacattggtaactgcaatttctttaatt
aaacaatccaaagtatctgctgatgatcgttgcaaagttcttattagctctttgcaagat
tgcctgcatggaattgaatccaagtcttatggttctggatcaagaagacgtgaacgatca
agagaaagggatcatagtagatcacgagaaaagagccggcgtcataaatcccgcagtaga
gatcgtcatgatgattattacagagagagaagccgagaacgagagagacaccgggaccgg
gaccgagaccgggatcgagagcgtgaccgagagcgcgagtatcgtcatcgttag
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