Bos indicus (zebu cattle): 109559840
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Entry
109559840 CDS
T04792
Symbol
TNRC6B
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
biu
Bos indicus (zebu cattle)
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109559840 (TNRC6B)
03036 Chromosome and associated proteins [BR:
biu03036
]
109559840 (TNRC6B)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109559840 (TNRC6B)
Chromosome and associated proteins [BR:
biu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109559840 (TNRC6B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
M_domain
RRM_1
Motif
Other DBs
NCBI-GeneID:
109559840
NCBI-ProteinID:
XP_019817401
UniProt:
A0A6P5BVX1
LinkDB
All DBs
Position
5:118351844..118605579
Genome browser
AA seq
1815 aa
AA seq
DB search
MQTNEGEVSEESSSKVEQEDFVMEGHGKTPPPGEESKQEKEHEREEQLMEDKKRKKEDKK
KKEATQKVTEQKTKVPEVTKPSLSQPAAASPIGSSPSPPVNGGNNAKRVAVPNGQPPSAA
RYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPPSTAPGANPNNAQVTGALL
QSEGGTAPESTLGGAAASNYANSTWGPGASSNSGASPNPIHIWDKVIVDGSDMEEWPCIA
SKDTESSSENTTDNNSASNPGSEKSTLPGSTTSNKGKGSQCQSASSGNECNLGVWKSDPK
AKSVQSSNSTTESNSGLGNWRNVSGQERIGPGSGFSNFNPNSNPSAWPALVQEGNSRKGA
LETETSNSSAQVSTVGQASREQQSKMENAGVNFVVSGREQAQIHNTDGPKNGNTNSLNSS
SPNPMENKGMPFGMGLGNASRSTDAPSQSTGDRKTGSVGSWGAARGPSGTDTASGQSNSG
NNGNNGKEREDSWKGAPVQKSTGSKSDSWDNNNRSTGGSWNFGPQDSNDNKWGEGNKMTS
GVSQGEWKQPTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWGRSSSS
TGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWG
QTQIKQDTVWDVEEVPRPEGKSDKGTEGWESAATQTKSSGGWGDAPSQSNQMKSGWGELS
ASTEWKDPKNTGGWNDYKNNNSSNWGGGRPDEKTSSSWNENSSKDQGWGGGRQPNQGWTS
GKNGWGEEVDQAKTSNWENAASKPVSGWGEGGQSEIGTWGSGGNASLASKGGWEDCKRSP
AWTETGRQPSSWNKQHQQQPPPQQLPPPQPEASGSWGGPAPPPPGNGRPSNSNWSSGPQP
VTPKDEEPSGWEEPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPAPREAN
LPTPMTGKSASVWSKSTPSAPDNGTSAWGEPNESSPGWGEMDDTGASTTGWGTAPSNAPN
AMKPNSKSMQDGWGENDGPVAGTRHPSWEEEDDGGVWNTAGSQGSASSHNSASWGQGGKK
QMKCSLKGGNSDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSVGSLPDKKFDVDKRAMNL
GDFNDIMRKDRSGFRPPNSKDMGTTDSGPYFEKGGNHGLFGNSTAQSRGVHTPVQPLNSS
PNLRAQVPPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQQIAMLSQLPQIPQFQLA
CQLLLQQQQQQQLLQNQRKLSQAVRQQQEQQLARMVSALQQQQQQQQQQQQRQPSMKHSP
SHPVGPKPHLDNMVPNALNVGLPDLQTKGPIPGYGSGFSSGGMDYGMVGGKXAGTESRFK
QWTSMMEVPSVATQEANMHKNGAIVAPGKTRGGSPYNQFDIIPGDTLGGHTGPAGDSWLP
AKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTATSPIVDTD
HQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIGHNP
THLSNKMWKNHISSRNTTALPRPPPGLTNPKPSSPWSSTAPRSVRGWGTQDSRLASASTW
SDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAK
AQTALHMCVLGNTTILAEFATDDEVSRFLAQAQPPTPAATPSAPAAGWQSLETGQTQSEP
VGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPPNYSSSLWGVPTVEDPHRMGSPA
PLLPGDLLGGGSDSI
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccaatgagggagaagtatcggaagaaagcagttccaaggtggaacaggaggat
tttgtaatggaagggcatggcaagactccacctcctggtgaagaaagcaaacaagagaag
gagcacgaaagggaagaacagttaatggaagacaagaaaaggaagaaagaggataaaaag
aaaaaagaagccactcagaaggtcacggaacaaaaaaccaaagtgcccgaagtgacgaaa
ccaagtttaagccaaccagcggccgccagcccaattggcagctctccatcgccaccagtc
aatggtggcaacaatgccaaaagggtggcagtgccgaacggacaaccgccaagcgccgcc
cgctacatgcctcgggaggtgccgccgcgattccgttgccagcaggaccacaaagtgtta
ctaaaacgtgggcagccccctccaccgtcctgcatgctcctcgggggcggggcagggcct
cctccctcaacggcgcccggagcaaaccccaacaacgcacaagtgacaggagcgctgctg
cagagcgagggtgggaccgcgccagagtcaacccttggaggtgctgctgcttcaaattat
gcaaattccacttggggcccgggagcctcctccaacagcggcgcctcccccaaccccatt
cacatctgggacaaggtgattgtagacgggtctgacatggaagagtggccttgcattgcc
agcaaagacactgagtcttcttccgaaaacaccaccgataacaacagtgcctcaaaccct
ggctctgagaagagcactctgccaggaagcaccactagtaacaaaggaaaagggagccag
tgccagtctgcaagttccgggaacgaatgtaatctgggggtctggaaatctgaccctaag
gctaaatctgttcaatcttccaactctaccacggagagcaacagtggactaggaaactgg
aggaatgtgagtggtcaggagaggattggacctggctctggcttcagcaactttaaccca
aatagcaacccatctgcctggccagcgctggtccaagaaggaaattctaggaagggggca
ttggaaacggagacgagtaattccagtgcacaggttagcacagtgggtcaggcatccagg
gaacagcagtcaaagatggaaaatgcgggtgttaattttgttgtctctggcagagagcag
gctcaaattcataacactgatggaccaaaaaatggaaacactaactccttgaactcaagt
tcaccaaaccccatggagaataagggaatgccctttgggatgggcttggggaacgcctcc
aggagcactgatgccccttcacaaagcactggagatcgaaagactgggagtgttggatct
tggggtgcagctagggggccttctggaactgacacagcctctggacaaagcaattctgga
aacaatgggaacaatggaaaggagagagaggactcctggaaaggagctcctgttcagaaa
tcaactgggtcaaaaagtgactcttgggacaacaataacaggtctacgggtgggtcctgg
aactttggccctcaggactctaatgacaacaaatggggtgaagggaacaaaatgacatcc
ggggtctctcagggagaatggaaacagccgactgggtctgacgagttgaaaattggagaa
tggagtggtccaaaccaaccaaattctagcactggagcatgggacaatcagaagggccac
cccctccctgaaaaccaaggcaatgcccaggctccctgttggggaagatcttccagctcc
acgggaagtgaagttggaggtcaaagcactggaagcaaccacaaagcaggaagtagtgac
agtcacaattctggccgtcggtcgtaccggcccacacatcctgattgtcaggctgtcttg
cagactcttttgagccgaactgatttggaccccagggtgctctcaaacactggctggggc
caaactcaaattaagcaggacacagtgtgggacgttgaagaggtgccaaggcccgagggg
aaatctgacaaaggaactgaggggtgggagagcgctgccacacagaccaagagctcaggg
ggctggggagacgcacccagccaaagcaatcaaatgaagtctggatggggagagctctca
gcctctacagagtggaaagaccccaagaacacaggaggctggaatgactataagaacaac
aactcttccaactggggaggaggacgaccggacgagaagacatcttcctcttggaatgag
aactccagcaaggatcaggggtggggaggtggacgccagcccaaccaaggatggacttct
ggaaagaatggttggggagaggaggtagatcaggcgaaaaccagcaattgggaaaatgct
gcaagtaaacctgtgtccgggtggggcgaaggtgggcagagtgaaatcgggacttggggg
agtggtgggaacgcgagcctggcttccaaaggcgggtgggaagactgcaaaaggtctccg
gcatggacggagacaggcagacagcccagttcctggaacaaacagcaccaacagcagccg
ccgccacagcagctaccaccaccacaacccgaggcctcyggctcctggggaggcccagcc
ccaccacctccaggcaacggacgaccttccaattccaactggagcagcgggccgcagcca
gtaacccccaaggatgaggaacccagcggttgggaagagccatccccacagtcgatcagt
cggaagatggacattgacgatggcacttccgcgtggggagaccccaacagttataactac
aagaatgtgaatctgtgggataagaattcccaagggggcccagcacctcgagaagcaaac
ctgcctaccccgatgaccggcaaatcagcatcagtctggagcaaaagcacaccatctgct
ccagataatggtacttcagcttggggtgagccaaacgaaagcagtcctgggtggggcgag
atggatgacacgggagcgtcgacaacaggctgggggactgcaccctccaatgctccaaat
gccatgaaacctaattccaaatctatgcaagatggctggggggagaatgacgggccagtg
gcaggaactcgccatcccagctgggaagaggaggatgatggaggagtctggaacactgcc
ggctctcagggaagcgcttcctcccacaactcagcaagctggggacaaggaggaaagaaa
caaatgaagtgctcactcaaaggaggaaacagtgattcatggatgaatcctcttgccaaa
cagttttcaaatatgggattgctgagtcaaactgaagataacccaagtagcaaaatggat
ttgtctgtagggagccttccagataaaaaatttgatgtggacaagcgagcaatgaatctc
ggggattttaatgatatcatgaggaaggatcgatctgggttccgtccacctaattccaaa
gacatgggaaccacagatagtgggccttattttgagaagggtggcaatcatggtttgttt
ggaaatagcacagcacaatcgagaggcgtgcacacccccgtgcagccactgaactcttct
cctaatctccgggcgcaagtgcctccccagttcatttccccccaggtttctgcctcaatg
cttaagcagtttcccaacagtggcctgaatccaggtcttttcaacgtggggccccagtta
tctcctcaacaaattgccatgctgagccagcttccacagattccccagtttcagttggca
tgtcagcttctcctgcagcagcagcaacagcagcagttgttacaaaaccagaggaagctt
tctcaagctgttcgccagcagcaggagcagcagctggctcggatggtgagcgccctccag
cagcagcagcagcaacagcagcagcagcagcagaggcagcccagcatgaagcattcgcca
tctcacccygttgggcccaagccacatctggacaacatggtacccaacgctctgaatgtg
gggctcccagaccttcaaaccaaagggccaatacctggatatggttctggcttcagctcc
ggcggcatggactacggcatggttggtgggaagraggctggaacagagtctcgctttaaa
cagtggacctccatgatggaggtgccctctgtagccacacaggaagccaatatgcacaaa
aatggcgctatygtggcccctggtaagacccgaggagggtcaccatacaaccagtttgac
atcatcccaggtgacacactgggtggccatacgggtcctgctggtgatagctggttacct
gccaaatctccaccaacaaataaaatcggaagtaaatctagcaatgccagttggcctcca
gaattccaaccaggagtgccatggaaaggtatccaaaacattgaccctgaatctgacccc
tatgtcaccccaggaagtgtgctggggggtacagccacatctcccattgtagatactgac
caccaacttctgcgggataacaccacagggtctaattcttccctcaacacctcgctgcct
tcacctggtgcctggccctacagtgcctctgacaactcctttaccaacgttcatagcact
tcagcaaagtttcctgattacaaatcaacatggtccccagatcccataggacacaacccc
actcatctctccaacaagatgtggaaaaaccatatttcctcaaggaacactacagcgctg
ccccgcccgcctcccggtctgaccaaccccaaaccatcatctccctggagcagcacagca
ccccgctcagtcagggggtgggggacacaggactcacggctcgcctccgcctctacctgg
agtgatggtggttcagttcgtcctagttactggctggttcttcacaatctcactccacag
attgatgggtcaaccttgagaaccatctgcatgcagcatggcccactgctgacattccat
ctgaacctaacccagggcactgccctgatccgatacagcaccaaacaggaggcggccaag
gcccaaactgcactgcacatgtgtgtgttgggaaacactaccatcctggctgagtttgcc
actgatgacgaagtcagccgctttctggcacaagctcagccccctacacctgcggcaacc
ccgagcgcgcccgccgcgggctggcagtccctggagaccggccagacccagtcagagccc
gtcggacctgctctgaatcttttcggtgggtccacggggctcgggcagtggagcagcagt
gctggtggcagcagcggggccgatcttgccggcgcttcattgtggggcccccccaactac
tcttctagcttgtggggagtcccgaccgtggaagaccctcataggatgggcagccctgct
cctttactacctggtgaccttctgggaggagggtcggattcaatctga
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integrated database retrieval system
