KEGG   Bos indicus (zebu cattle): 109560656
Entry
109560656         CDS       T04792                                 
Symbol
AFF1
Name
(RefSeq) AF4/FMR2 family member 1 isoform X1
  KO
K15184  AF4/FMR2 family member 1
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu05202  Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:biu00001]
 09160 Human Diseases
  09161 Cancer: overview
   05202 Transcriptional misregulation in cancer
    109560656 (AFF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:biu03021]
    109560656 (AFF1)
Transcription machinery [BR:biu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     109560656 (AFF1)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int BRD4_CDT
Other DBs
NCBI-GeneID: 109560656
NCBI-ProteinID: XP_019818621
UniProt: A0A6P5BZ80
LinkDB
Position
6:106065865..106207308
AA seq 1222 aa
MAAQSSSLYNEDRNLLRIREKERRNQEAHQDKEAFSEKIPLFGEPYKTEKGDELSSRIQN
MLGNYEEMKEFLSSKSHPQRLDASENRLGKPRYPLFPEKGSSJPPHSFHTSVHHQPVNTP
ACGPHPAGNIGHHPKMAQPRMEPMPSLHAKSYGPPDSQHXTQERLGQEGYGSSHHKKGDR
RADGDHCALTTDSAPERELSPLFSLPSPVPPLSPVHSNQQTAPRTQGSGKVPSSSSSNKG
YCLAKSPKDLAVKVHDKETPQDSTGAVASLGVAPPQPPSQTFPPPSLPSKSLAMQQKPTA
YVRPMDGQDQAPSESPELKPLPEEYRQQTFEKSDLKVPAKAKLTKLKMPSQSVEQTYSNE
VHCVEEILKEMTHSWPPPLTAIHTPSTAEPSKFPFPTKDSQHISSAVPNQKQYDTSSKTH
SNSQQGTSMLKDDLQLSDSEDSDSDQTSEKPPFAPAPPSAPPALPAAAASAHSSSAESES
TSDSDSSSDSESESSSSDSEENEPREAPAPEPEPPTTNKWQLDNWLTKVSQPAVPTEAPG
STEPPARPPDTKGKGGDSATAGHERPESKEPPPKGSSKAPRVPSEGPHAGKRSCQKSPXQ
QEPPQRQTVGSKQPKKPIKASAPGHADAPADARACLQVESEPGLPPPASRDQPSKDKPKV
KTKGRPRAADSREPKPAVPTPSDRKKHRSGPPKAPPKDAAAEDRSPEHFALVPLTQSQGP
VRXXXGGAGARTSGCRLAVVVQEDRRKDKPPVPSRDTKLLSPLRDAPPPQSLVVKITLDL
LSRIPQPPGKGSRPKKPEDKQPPAGKKPDPEKRSSENASKLAKKRKGEAEKDHDSKKVRL
EKEVKSQPSSSSSHKESSKSKMSRPSSEPSKKEMLPPSLVSSSSSQKPAKPAQKRPRQED
PSCQDPPKSAGSAKGSHRDPSASKHRKAEGKVSGSSTEHKGSSGDTANRFPVPSLPNGNS
KPGKPHVKFDKQQADFHLKEAKRLKDKAELVTDKVGKAFKYLEAALSFIECGVALESESP
ASKSAYSIYSETVDLIKFILSLKSFSDATTPTQEKIFAVLCMRCQSILNMAMFRCKKDMA
IKYSRTLNEHFFKTSSKVAQAPSPCIARSTGTPSPLSPIPSPASSIGSQSSAGSVGSGAL
PATISTPVTIQNMTSSYVSITSHVLTAFDLWEQAEVLTRKNKEFFAQLSTSVCALALNSS
LMDLVHYTRQGFQRLKQVTKTP
NT seq 3669 nt   +upstreamnt  +downstreamnt
atggcagcccagtcaagcagcttgtacaatgaagacagaaacctgcttcgaattagagag
aaggaaagacgcaaccaggaagctcaccaagataaagaggcattttctgaaaagatcccc
ctttttggagagccatacaagacagagaaaggtgatgagctatccagtcggatacagaac
atgctgggaaactatgaagagatgaaggagttccttagtagcaagtcccacccccagcgc
ttggatgcttctgaaaataggctggggaagccgagataccctttatttcctgagaagggg
agcagcmttccaccccactccttccacaccagtgtccaccaccagcccgttaacactcct
gcctgtgggccacatcctgctggtaacatcggccaccacccaaagatggcgcagccaaga
atggaaccaatgccaagtctccacgccaaaagctatggcccaccggacagccagcaccyg
acccaagagcgcctcggtcaggaggggtacggctctagtcatcacaaaaagggtgaccgc
agggctgatggagaccactgtgctttgacgacagactctgctccggagagggaactttcr
cctctgttctctttgccttccccagtcccccctttgtcacctgtacattccaaccagcag
actgctcccaggacgcaaggaagcggcaaagttcccagcagyagcagtagcaataaaggc
tactgcctggccaagtctcccaaggacctagcggtaaaggtgcacgataaagagacccct
caagayagcacaggggcagtggccagccttggggtagcccctcctcagccaccttctcag
accttccccccaccctccctcccctcaaaaagccttgcaatgcagcagaagcccacggct
tatgtccggcccatggacggtcaagaccaggctcctagcgagtctcctgaactgaaaccc
ctgccggaggagtaccggcagcagacctttgagaaatcagacttaaaagtgcctgccaaa
gccaagctcacgaagctgaaaatgccttctcagtcagtcgagcagacctactccaatgaa
gtccattgtgttgaagagattctgaaggaaatgacccactcatggcctcctcctttgaca
gcaatacacacgcctagtacagctgagccctccaaatttccttttcccacaaaggattct
cagcacatcagttctgcggtcccaaaccaaaaacaatatgatacatcttcaaaaactcac
agtaattctcagcagggaacatccatgctcaaagatgaccttcagctcagtgacagtgag
gacagtgacagcgatcaaacctcagagaagcctcctttcgcacctgcacctccaagcgct
ccaccggcgctgccagcagccgcggcctcagcacattccagcagcgccgaatcggagagc
accagcgactccgacagctcctcggactcggagagcgagagcagctccagtgacagcgag
gagaacgaaccccgagaagccccggctcccgagcccgagcctccgacaaccaacaaatgg
cagctggacaactggctgaccaaagtcagccagcccgcggtgcccaccgaggccccgggt
agcacggagcccccggcccgacccccggacactaagggcaagggcggcgacagcgccacc
gcgggtcacgagcgcccagagtccaaagagcctccccccaaaggctccagcaaagccccc
cgggtcccatccgaaggcccccacgcgggcaagaggagctgtcagaagtcccctrcccag
caggagcccccccagcggcaaaccgtgggaagcaaacagccgaaaaagcccatcaaggct
tccgcccccgggcacgcggatgcgcctgcagatgcgcgtgcctgcctgcaggtggagagc
gagcccggacttcctcccccggcctccagggaccagccctccaaagacaagcccaaggtg
aagacgaaagggcggccccgcgccgcagacagccgggagcccaagccggcggtgcccacc
cccagcgaccggaagaagcaccgcagcggccccccgaaggcgcccccgaaggacgcggcg
gcagaggaccggagccccgaacactttgcgctcgttcccctgacccagagccagggccct
gtccgcnnnnnnnncggcggcgccggcgccaggactagtggctgcaggctggctgtggtg
gtccaggaggaccgccgcaaagacaaacccccggtgccttcgagagacaccaagctgctc
tccccgctcagggacgctccgccgccacaaagcttggtggtgaagatcacactcgacctc
ctgtctcggataccccagcccccagggaagggcagccgccccaagaaaccagaagacaaa
cagccaccagcagggaagaagccagatcctgagaagagaagctcagaaaacgccagcaag
ttagccaaaaagagaaagggtgaagcagagaaagaccacgayagcaagaaagtcaggctg
gagaaggaagtcaagtcacagccgtcgtcttcctcttcccacaaggaatcttccaaatca
aagatgtccaggccctcctctgagccctcaaagaaggaaatgcttcccccttcgctcgtg
tcatcctcatcctcccagaagccagccaagcctgcacagaagaggccacggcaggaagac
cccagctgccaggaccccccaaaaagtgccggtagtgccaagggcagccacagagaccct
tctgcctccaaacacagaaaagcagaggggaaggtctctggaagctccacagagcacaaa
ggatcttctggagatactgcaaaccgttttccagtgccttctttgccaaatggtaactcc
aaaccagggaagcctcacgtgaagtttgacaaacaacaagccgattttcacctgaaggaa
gccaaaaggttgaaggacaaagcagaattagtgacggacaaggtagggaaggcctttaaa
tacctggaggctgccttgtccttcattgagtgcggcgtcgccctggagtcggagagcccc
gcgtccaagtcggcgtactccatctactcggagaccgtggacctcattaagttcatactg
tcattaaaatccttctcagatgccacaacgccaacacaggagaagatatttgctgttcta
tgcatgcgttgccagtccattttgaacatggcaatgtttcgttgtaaaaaagatatggcg
ataaagtattcccgcacgcttaacgaacacttcttcaagacttcttccaaggttgcccag
gcaccttctccatgcatcgcaagaagcacaggcacaccgtcccccctctctccgatccct
tctccggccagctccatagggtcccagtcaagcgctggcagcgtggggagcggggcgctg
cccgccaccatcagcacccccgtcaccatccagaacatgacatcctcctacgtcagcatc
acttcccacgtccttaccgcctttgacctgtgggaacaggctgaggtccttaccaggaag
aacaaagaattctttgctcagctcagcacaagtgtgtgcgcgctggccctcaacagcagt
ttgatggatctggtgcattatacaagacagggtttccagcggctaaagcaagtaaccaag
acaccttaa

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