Bos indicus (zebu cattle): 109560744
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Entry
109560744 CDS
T04792
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu05016
Huntington disease
biu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
109560744 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
109560744 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
biu03019
]
109560744 (HTT)
04131 Membrane trafficking [BR:
biu04131
]
109560744 (HTT)
03029 Mitochondrial biogenesis [BR:
biu03029
]
109560744 (HTT)
Messenger RNA biogenesis [BR:
biu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109560744 (HTT)
Membrane trafficking [BR:
biu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
109560744 (HTT)
Mitochondrial biogenesis [BR:
biu03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
109560744 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
Motif
Other DBs
NCBI-GeneID:
109560744
NCBI-ProteinID:
XP_019818805
UniProt:
A0A6P5C025
LinkDB
All DBs
Position
6:120166286..120290068
Genome browser
AA seq
3131 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQQQQQQPPPPPQPPQPPQPPPQAQPPPQPPPPPP
PLGPAAAEEPLHRPKKELSATKKDRVHHCLTICENIVAQSLRNSPEFQKLLGIAMELFLL
CSDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELA
HLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAIPKIMASFGNFANDNEIKVLLKA
FISNLKSSSPTVRRTAAGSVVSICQHSRRTQYFYSWLLSVLLGLLVPGEGEHPTLLILGV
LLALRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHYTQHQDHNVVT
GALELLQQLLRTPPPELLRAXTTAGGVRQLAASKDEPGGRSRSGSIVELIAGGGSSCSPV
LSRKQKGKVLFGEAAPLEDDSEPRSEGSSPAFSASVKGEVGGELAASSGISTPGSASSAA
DSVGHDIITEQPRSQHTLQTDAVDLAACDLTSAATDGDEEDILSHSSSQMSAVPSDPAMD
LNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYPGMQVGQTQDEDEDATA
VLPDEDAEAFRNSSIALQQAHLLKSMGHCRQSSDSSVDKFVSREEAAEPGDPENKPCRVK
GDIGQSTDEDSAPLVHCVRLLSASFLLTGEKNALVPDRDVRVSVKALALSCIGAAVALHP
ESFFSKLYRAPLDTVEYPEEQYVSDVLNYVDHGDPQVRGATAILCGTLICSVLGRCRFHV
AGWMDAVRARTGNTFSLADCIPLLQKTLKDESSVTCKLACAAVRLCVMSLCSSSYSAWGL
QLITNLLALRSSSYWLVRTELLETVAEIDFRLVSFLEAKAESLHRGAHHYTGLLKLQERV
LSNVVIHLLGDEDPRVRHVAAASLMRLVPKLFYKCDQGQADPVVAVARDQSSVYLTLLMH
ETQPPSHFSVSAVTRIYRGYNLLPSITDVTLENNLSRVIAAVSHELITSTTRALTFGCCE
ALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMVSMILTLLSSAWFPLDLSAHQ
DALILAGNLLAASAPRSLRSSWASEDEASTAATKQEEAWPALGDRTLVPMVEQLFSHLLK
VINICAHVLDDVAPGPAVKAALPSLTNPPSLSPIRRKGKEKEPGEQASVPVSPKKGSEAS
PASRPPETSGPVATNKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQSSSEKFGGFL
RSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQ
LDGLSSHASKSQGRAQRLGSSSARPGLYHYCFMAPYTLFTQALADASLRNAAQAEQDQDT
AGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQ
VLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYE
RYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQ
KEVVVSMLLRLIQYHQVLEMFTLVLRQCHKESEDRWKRLSRQVADVILPMLAKQQMHIDS
HEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTLAAVSTVQLWVSGILAILRVLISQS
TEDIVLSRIQELSFSPYLVSCPTISRLRDGDSTSALEEHTEGRQMKNLPEETFARFLLQL
VGVLLEDIVTKQLRVEVSEQQQTFYCQELGTLLMCLIHIFKSGTFRRITAAASRLLRDGA
DGGFYGLESLNAWVRSMVPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPKRRSLSSTKS
LSPETSGEDEDPDVASKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLI
NLSHEPPVQDFISAIHRNSAASGLFIQAIQSRCENLSTPTMLKRTLQCLEGIHLSQSGAV
LMLYVDKLLCTPFRVLARMVDTLACRRVEMLLAANLQSSTAQLPAEELIRIQEHLQSSGL
AQRHQRLYSLLDRLRLATAPGSHGPTPPVTSHPLDGDGPLALEAVNPDKDWYVQLVKAQC
WTRSDSALLEGAELVSRIPAGDLGAFMMHSEFNLSLLAPCLGLGMREISGGQESPLFEAA
RTATLDRVTVVVQQLPAVHEAFQPFLPTQPSAYWSKLDDLFGDAALYRTLTTLAQALAQY
LLVFSKLPSHLHLPPEKERDTVKFMVMTVEALSWHLIHSRVPLSLDLQAGLDCCCLALQL
PGLWSLLAAPDMVTHACSLIHCVRFILEAIVVQPGDQLLSPERRTSTPKAAREDSVDSDT
QNPQYITAACGMVAEMVECLPSVLALGHKRNSHTPAFLTPVLRNIVISLARLPLVNSYTR
VPPLVWKLGWSPKPGGDFGTVFPEIPVEFLQEKEVFREFIYRINTLGWTSRTQFEETWAT
LLGVLVTQPLMMEQEESPPEEDVERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQ
PRNKPLKALDTRFGRKLSIIRGIVEQEIQAMVSRRENAATHHLYQAWDPVPSLAPATTGA
LISHDKLLLQLNPERELGDMSYKLGQVSIHSVWLGNSITPLREEEWDEEEEETEAPAPSS
PPTSPINSRKHRAGVDIHSCSQFLLELYSRWILPSSSARRTPVTLISEVVRSLLVVSDLF
TERSQFETMYLTLTELRKVHPSEDEILLQYLVPATCKAAAVLGMDKAVAEPVSRLLESAL
RSSHLPSTMGALHGVLYVLECDLLDDTAKQLVPVVTDYLLSNLQGRAHCVSVHSQQHVLV
MCATAFYLIENYPLDVGPDFSASVIQMCGVMLSGSEEATPSVVYHCVLRGLERLLLSEQL
SRLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKVSPGRASEPSTAAPDSESV
IVAMERVSVLFDRIRKGFPCEARVVARVLPQFLDDFFPPQDVMNKVIGEFLSSQQPYPQF
MATVVYQVFQTLHGAGQSPMVRDWVMLSLSNFTQRSPVAMAMWSLSCFFVSASTSPWVSA
ILPHVVSRMGKLEQVDVNLFCLVATDFYRHQIEEELDRRAFQSVFEVVAVPGNPYHRLLA
CLRSVQKAAAC
NT seq
9396 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtccctcaaatccttccagcagcag
cagcagcagcagcagcagcagcagcagcagcagcagcctccgccgccgcctcagccgcct
caaccccctcagccgccgccgcaggcgcagccgccgcctcagccgcccccgccgccgccg
ccgcttggccctgccgcggccgaggagccgctgcaccgaccaaagaaggagctctcagcc
accaagaaagaccgtgtgcaccactgtctgaccatctgtgagaacatagttgctcagtct
ctcagaaattctccagaatttcagaaacttttgggcatcgctatggaactttttctgctg
tgcagtgacgacgcggagtcagatgtcaggatggtggctgacgaatgcctcaacaaggtc
ataaaagctttgatggattctaatcttccgaggttgcagctagaactctataaggaaatt
aaaaagaacggcgcccctcggagcctgcgcgctgccctctggaggtttgccgagctggct
cacctggtccggcctcagaaatgcaggccgtacttggtgaacttgttgccttgcctgaca
cgcacaagcaagagacctgaggagtctgttcaggagacgttggcggcagcgatccctaaa
attatggcttcttttggcaactttgcgaacgacaatgagattaaggttctgttgaaggct
ttcatctcgaacctgaagtccagctccccaactgtgcggcggacagcagcgggctcggtg
gtcagcatctgccagcactccaggaggacgcagtacttttacagctggctgctcagcgtg
ctcctaggtttgctggtccccggggagggggagcaccccaccctcctgattctcggcgtc
ctgctcgcgctgaggtacttggtgcccctgctgcagcagcaggtcaaggacacaagcctg
aaaggcagctttggggtgacgcggaaagagatggaagtctctccctcgacggagcagctc
gtccaggtgtacgagttgaccttgcactacacccagcaccaggaccacaacgtcgtgact
ggggccctggagctgctgcagcagctcctccgaaccccgccgcccgagctcctgcgcgca
ntgaccacggcgggcggcgtccggcagctcgcggcctccaaggatgagcccgggggccgc
agtcggagcgggagcatcgtggagctgatagctggagggggttcttcatgcagccctgtc
ctttcaagaaaacaaaaagggaaagtgctctttggagaagcagcgcccttggaagacgac
tcggagcccaggtcggagggcagcagccccgccttctcagcctcagtcaagggtgaggtt
ggaggcgagctggctgcctcttccgggatctccacgcctggctctgccagctcagcggcc
gactctgtgggtcacgacatcatcaccgagcagccccggtcgcagcacacgcttcagacg
gacgcggtggatctggccgcctgtgacttgacaagcgccgccaccgatggggacgaggag
gacatcctgagccacagctccagccagatgagcgccgtcccttctgaccccgccatggac
ctgaacgacgggacccaggcctcctcgcccatcagcgacagctcccagaccaccaccgag
gggcccgattcagccgtgaccccttccgacagttctgaaattgtcttagatggcgccgac
agccagtatccagggatgcaggtggggcagacgcaggacgaggacgaggacgccaccgcc
gttcttcctgacgaagacgcggaggctttcagaaactcttccatcgcccttcaacaagca
catttgttgaaaagcatgggccactgcaggcagtcctctgacagcagtgtggataaattt
gtctcaagagaggaagctgccgagccaggggatccagagaacaagccttgccgggtcaaa
ggcgacatcggccaatccactgacgaggattctgcccctcttgtccattgcgtccgcctt
ttgtccgcttcatttctgctcacaggggaaaagaatgccttggttccggacagggacgtg
cgggtcagcgtgaaggcgctggccctcagctgcattggagccgccgtggcccttcatcct
gagtctttcttcagcaaactctacagagcacctcttgacaccgtggaataccctgaggag
cagtacgtgtccgacgtcttgaactatgtcgaccacggggacccgcaggtccggggagcc
acagccatcctctgcgggaccctcatctgctctgtcctcggccggtgccgcttccacgtg
gcgggctggatggacgccgtcagagcccggacaggaaatacattttctctggcggactgc
attcccctgctgcagaaaactttgaaggacgaatcatcagttacttgcaagttggcttgt
gctgctgtgaggctctgtgtcatgagcctctgcagcagcagctacagtgcctgggggctg
cagctcatcaccaacttactggccctgcggagcagctcctactggctggtgcggacggag
cttctggagaccgtggcagagatcgacttcaggttggtgagctttctggaggccaaagca
gaaagcctgcacagaggggcccatcactatacagggcttttaaaactgcaagagcgggta
ctcagtaatgttgtcatccatctgcttggagatgaagaccccagggtacggcatgttgct
gcagcttcgttgatgaggctcgtcccaaagctgttttacaagtgcgaccaaggacaagcg
gacccagtggtggccgtggcacgagaccagagcagtgtgtacctgacgcttctcatgcac
gagacgcagcctccctcccacttctccgtcagcgccgtaaccagaatttatagaggctat
aacctgttaccaagcatcacagatgtcactctggaaaataacctctctagagtcattgca
gcggtttctcatgaactgatcacatcgaccacgagggcactcacatttggatgctgtgaa
gctctgtgtctactttcaactgccttcccagtttgcatttggagtttgggttggcactgc
ggagtgcccccgctgagtgcctcagacgagtccaggaagagctgcaccgtggggatggtc
tcgatgatcctgaccctgctgtcgtctgcctggttcccgctggatctctccgcccaccag
gatgctctgatcttagccgggaacttgctggcagccagtgcccccaggtctctgaggagc
tcgtgggcctctgaagatgaggccagcacggcagccaccaagcaggaggaggcgtggccg
gccctgggtgaccggaccctggtgcccatggtggagcagctcttctcccacctgctgaag
gtcatcaacatctgcgcacacgtcctggatgatgtggctccgggacccgcagtgaaggca
gccctgccttctctcacaaacccgccttctctgagcccaatccgacggaaagggaaagag
aaggagccaggagagcaggcgtctgtgcctgtgagtcccaagaaaggcagcgaggccagt
ccagcctctcggccacctgaaacctcggggcctgtcgccacaaacaagtcctcgtcactg
ggaagcttctgtcacctgccttcttacctcaaactgcacgacgtcctgaaagccactcac
gccaactacaaggtcaccttggatcttcagagcagcagcgagaagtttgggggtttcctg
cgctctgccttggacgttttgtctcagattctggagctggcgacgctgcaggacatcggg
aagtgtgttgaagagattctgggatacctgaagtcttgcttcagtcgagagccaatgatg
gcgaccgtgtgtgttcagcagttgctgaagactctgtttggaacaaacctggcctcccag
ttggacggcctgtcttcgcacgccagcaagtcgcagggccgtgcgcagcgcctcggctcc
tccagcgcgcggcccggcttgtaccactactgcttcatggcaccgtacaccctcttcacc
caggccttagcggacgccagcctgcggaacgcggcgcaggcagagcaggaccaggacacc
gcagggtggtttgacgtcctccagaaagtgtcaacccagctgaagacaaacctcaccagc
gtcacaaagaaccgagcagacaagaatgctattcacaatcacattcgcttgttcgagcct
cttgttataaaggctttgaagcagtacacgaccaccacctccgtgcagctgcagaagcag
gtgctggacctgctggcgcagctggtgcagctgcgggtcaactactgcctcctggactca
gaccaggtgtttattggatttgtgctgaagcagtttgaatacattgaggtcggccagttc
agggagtcagaggcgattatcccaaacatctttttcttcctggtattactgtcttacgag
cgttaccactcaaaacagatcatcgggatccctaaaatcatccagctctgtgacggcatc
atggccagcgggaggaaggcagtgacgcacgccatacctgccctgcagcccatagtccac
gacctcttcgttttaagaggaaccaataaggctgatgcaggaaaagagcttgaaacccag
aaagaggtggtggtgtccatgttactgagactcatccagtaccatcaggtgctggagatg
ttcacgctggtcctgcggcagtgccacaaggagagcgaggacaggtggaagcggctgtcc
cggcaggtggccgacgtcatcctcccgatgctggccaagcagcagatgcacattgattct
cacgaggccctgggagtgctgaacacgttgtttgagattttggccccctcctccctacgc
cctgtggacatgcttttacggagtatgttcgtcaccccagacactctggcagcggtgagc
acggtccagctgtgggtgtcaggcatcctggccatcctgcgggtgctgatttcccagtcg
accgaggacatcgtcctgtcccgcatccaggagctctccttctctccgtacctggtctcc
tgtccgacaatcagtaggttaagagatggggacagtacttcagcactggaggagcacact
gaagggagacagatgaagaatctgccggaagaaacatttgccaggtttctgctccagctg
gttggagtcctcttagaggacattgttacaaagcagctgagagtggaggtgagcgagcag
cagcagactttctactgccaggagctgggcacgctgctcatgtgtctcatccacatcttc
aagtccgggacgttccggaggatcaccgcagctgcctcgaggctcctgagggacggcgcg
gacggcggcttctacggcctggagagcctgaacgcgtgggtgcgctccatggtccccacg
cacccggccctggtgctgctctggtgtcagatcctgctgctcgtcagccacaccgactac
cgctggtgggcagaggtgcagcagacccccaaaagacgcagcctgtccagcacgaagtca
ctgagtccggagacrtctggagaggacgaggatccggacgtggcttccaagctggggatg
tgcaacagagagatcgtgcggagaggcgccctcattctcttctgcgactacgtctgccag
aacctgcatgattcggagcacttgacatggctcatcgtgaaccacattcaagacctgatc
aacctgtcccacgagcctccggtgcaggacttcatcagcgccatccatcggaattccgct
gccagtggccttttcatccaggcaattcagtctcgctgtgaaaatctttcaactcccacc
atgctgaagagaacgctccagtgcctggaagggatccacctgagccagtcgggtgccgtg
ctgatgctgtacgtggacaagcttttgtgcacgccgttccgtgtgctggctcgcatggtc
gacacccttgcttgtcgccgggtggaaatgcttttggccgcaaatttacagagcagcacg
gcccagctgccggcggaggagctgatccggatccaggagcacctgcagagcagcgggtta
gcacagagacaccagaggctctactccctgctggacaggcttcgtctcgccaccgcaccg
gggtcgcatggccccacgccccccgtcacntcccaccccctggacggggatgggcccctg
gcactggaggcagtgaatcctgacaaagactggtacgtgcagctggtgaaggcccagtgc
tggactcggtcagactctgccctgctggaaggcgcagagctggtgagccggatccctgcg
ggcgacctgggcgccttcatgatgcactcggagttcaacctgagcctgttggcgccgtgc
ctgggcctgggcatgcgtgagatctcggggggccaggagagccccctttttgaagcagct
cgcacggcaactctggaccgcgtgactgttgtggtccagcagcttcccgccgtccacgaa
gctttccagccgttcctgcccacgcaacccagcgcctactggagcaagctggatgacctc
tttggggatgctgcactgtatcggactctgaccaccctggcccaggccctggcccagtac
ctgctggtgttctccaagctgcccagccatttgcaccttcctcctgagaaagagagggac
actgtgaagttcatggtcatgactgtcgaggcactgtcgtggcacctgatccactcgagg
gtcccgctgagcctggacctgcaggcgggcctggactgctgctgcctggccctgcagctg
cccggcctctggagcctgctcgccgcgcccgacatggtgacccacgcctgctccctcatc
cactgtgtgcggttcatcctggaggccattgtggtgcagcccggggaccagcttcttagt
ccagaaagaaggacgagcacccccaaggctgccagagaggacagcgtggattcagacaca
cagaaccctcagtacatcactgcagcctgtggcatggtggccgagatggtggagtgcctg
ccgtcggtattggccttgggccacaagaggaacagccatacgcccgcgttcctcacgccg
gtgctcaggaacatcgtcatcagcttggcccgcttgccgctcgtcaacagctacacgcgc
gtcccgcccctggtgtggaaactcggatggtcacccaaaccaggaggggatttcggcaca
gtgttccctgagatccccgtggagttccttcaggagaaggaggtcttcagagagttcatc
taccgcatcaacacgctggggtggaccagccgcacccagtttgaggagacatgggccacc
cttctcggcgtcctggtgactcagccgctcatgatggagcaggaggagagccccccggaa
gaggacgtggagaggacgcagatccacgtcctggctgtgcaggccatcacctccctggtg
ctgagcgcgatgaccgtgcctgtggctggcaacccggccgtgagctgcctggagcagcag
ccccggaacaagcccctgaaggcccttgacaccaggtttgggaggaagctgagcatcatc
agagggattgtcgagcaggagatccaggcaatggtttccaggagagaaaacgccgccact
caccacctgtaccaggcgtgggaccccgtcccgtctctggccccggccaccacaggtgct
ctcatcagccatgacaagctgctgctgcagctcaaccccgagcgtgagctgggggacatg
agctacaagcttggccaggtgtccatccactcggtgtggctggggaacagcatcacgccc
ttgcgagaggaggagtgggacgaggaggaggaggagaccgaggccccggcaccgtcgtcc
ccgcccacatctccgatcaactccaggaaacaccgggctggagtcgacatccactcctgt
tcgcagtttttgcttgagttgtacagtcgctggatcctgccgtcgagttccgccaggagg
acccccgtcaccctgatcagcgaggtagtgcgctcgctcctcgtggtctcggacttgttc
actgagcgcagccagtttgagacgatgtacctgacgctgacggagctgcggaaggtacac
ccctcggaagacgagattcttctgcagtacctggtgcccgccacctgcaaagcagccgct
gtcctcgggatggacaaggccgtggcggaaccggtcagccggctgctggagagcgcgctc
cggagcagccacctgcccagcacgatgggtgccctgcacggcgtcctgtacgtgctggag
tgcgacctcctggatgacaccgccaagcagctcgtccctgtcgtcaccgactacctcctc
tccaacctccagggtagagcccactgcgtgagcgtgcacagccagcagcacgtgctggtg
atgtgcgccacggccttctacctgatcgagaactacccgctggacgtgggcccggacttc
tcggcctccgtcatacagatgtgtggagtgatgctgtctggaagcgaagaggccaccccg
tccgtcgtctaccactgcgtcctgcggggcctggagcgcctccttctctccgagcagctc
tcccggctagacgcagagtccctggtcaagctgagcgtggaccgggtgaatgtgcacagc
ccgcaccgcgccatggcggccctgggcctcatgctcacctgcatgtacacaggaaaggag
aaagtcagtccaggccgagcctccgagcccagcactgccgcccccgacagcgagtccgtg
atcgtggccatggagcgggtgtctgtcctctttgacaggatccggaaggggttcccctgc
gaagcccgcgtggtggcacgcgtcctgccccagttyctggacgacttcttcccgccccag
gacgtcatgaacaaggtcattggcgagttcctgtccagccagcagccatacccgcagttc
atggccaccgtcgtgtaccaggtgttccagacgctgcacggcgcggggcaatcgcccatg
gtgcgggactgggtcatgctgtccctctccaacttcacgcagcggagcccagtcgccatg
gccatgtggagtctctcctgcttcttcgtcagcgcgtccaccagcccgtgggtctcggcg
atcctcccgcacgttgtgagcaggatgggcaagctggagcaggtggacgtgaacctcttc
tgcctggtggccacggacttctaccgacaccagatagaggaggagctcgaccgcagggcc
ttccagtccgtgttcgaggtggtcgccgtgcccggaaacccataccaccgcctgctggct
tgtctgcggagcgtccagaaggccgctgcatgctga
DBGET
integrated database retrieval system
