KEGG   Bos indicus (zebu cattle): 109562008
Entry
109562008         CDS       T04792                                 
Symbol
AFF4
Name
(RefSeq) AF4/FMR2 family member 4 isoform X1
  KO
K15185  AF4/FMR2 family member 4
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:biu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    109562008 (AFF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:biu03021]
    109562008 (AFF4)
Transcription machinery [BR:biu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     109562008 (AFF4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 109562008
NCBI-ProteinID: XP_019820466
UniProt: A0A6P5C5S5
LinkDB
Position
7:complement(44134865..44220155)
AA seq 1164 aa
MNREDRNVLRMKERERRNQEIQQGDDAFPPSSPLFAEPYKVTSKEDKLSSRIQSMLGNYD
EMKDFIGDRSIPKLVAIPKPTVPPTADEKSNPNFFEQRHGSSHQSSKWTPVGPAPSTSQS
QKRSSGLQSGHSSQRASAGASGGTNSSGQRHDRDSYSSGGSSSRKKGQHGSEHSKSRSSS
PGKPQAVSSLSSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHSNQSFPP
SLMSKSSSMLQKPTAYVRPMDGQESMEPKLSSEHYSSQSHGNSMTELKPSSKAHLTKLKI
PSQPLDASASGDVSCVDEILKEMTHSWPPPLTAIHTPCKTEPSKFPFPTKESQQSSFGPG
EQKRYNPSSKTSNAHQSKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPGSNSEPSHHNSE
GADNSRDDSSSHSGSESSSGSDSESESSSSDSEANEPSQSASPEPEPPPTNKWQLDNWLN
KVNPHKVSPASSVDSNIPSSQGYKKEGREQGTGNSYTDPGGPKETSSATPGRDSKTVQKG
SESGRGRQKSPAQSDSTAQRRTVGKKQPKKTEKAAAEEPRGGLKIESETPVDMATSMPSS
RHKAATKGSRKPNIKKESKSSPRPSAEKKKYKSTSKSSQKSREIIETDTSSSDSDESESL
PPSSQTPKYPESNRTPVKPSSVEEEDSFFRQRMFSPMEEKELLSPLSEPDDRYPLIVKID
LNLLTRIPGKPYKETEPPKGEKKNVPEKHTREAQKQASEKVSNKGKRKHKNEDDNRANES
KKPKTEDKNMAGHKPSSNKESSKQSASKEKDLLPSPAGPVPSKDPKTEHGSRKRTVSQSS
SLKSSNNSNKENSASSKNSSSASKQKRTEGKTSSSSKEVKEKAPNSSSNCPPSAPTPDAS
KPRRTKLAFDDRNYSADHYLQEAKKLKHNADALSDRFEKAVYYLDAVVSFIECGNALEKN
AQESKSPFLMYSETVELIKYTMKLKNYLAPDATAADKRLTVLCLRCQSLLYLRLFKLKKE
TALKYSKTLTEHLKNSYNNSQAPSPGLGSKAVGMPSPVSPKLSPGNSGNYSSGASSASAS
GSSVTIPQRIHHMAASYVQVTSNFLYATEIWDQAEQLSKEQKEFFAELDKVMGPLIFNAS
IMTDLVRYTRQGLHWLRQDAKLIS
NT seq 3495 nt   +upstreamnt  +downstreamnt
atgaaccgtgaagaccggaatgtgctgcgtatgaaagaacgggaaaggcggaatcaggaa
attcagcagggcgacgacgccttcccacctagctctcctctctttgctgagccatacaaa
gttactagcaaagaagataagctgtcaagtcgtattcagagtatgcttggaaactacgat
gaaatgaaggatttcataggagacagatctataccaaagcttgttgcaattcccaagcct
acagtaccgccgacagcagatgaaaaatctaacccaaatttctttgaacagagacatggg
agctctcatcagagtagcaaatggactccagtaggacctgcacccagcacttctcagtct
cagaaaaggtcctcgggcttacagagtggacacagtagccagcgggccagtgcaggtgcc
agtggtggcactaatagtagtggccagagacatgaccgtgactcatacagcagtggtggg
agcagtagccgaaaaaaaggccagcatggatcagaacactccaaatcacgctcttccagc
cctggaaaaccccaggctgtttcttcattaagctccagtcattccaggtctcatgggaat
gatcaccatagcaaagaacatcagcgttccaaatcacctcgggaccctgatgcaaactgg
gattctccttcccgtgtacctttttcaagtgggcagcactcaaatcagtctttcccacct
tcattgatgtcaaagtccagctcaatgctacagaaacccactgcctatgtgcggcccatg
gatggacaggagtccatggaaccaaagctgtcctctgaacactacagcagccagtctcat
ggcaacagcatgactgaactgaagcccagcagtaaagcacatctcaccaagctgaaaata
ccttcccaaccattggatgcatctgcttctggggatgtgagttgtgtggatgaaattctt
aaagagatgacgcattcatggcctccccctctaacggctattcatacaccatgcaaaaca
gaaccttccaaatttccttttccaactaaggagtctcagcagtccagttttggccctgga
gaacaaaaaagatataatccttcttctaaaacttcaaatgcacaccagtctaaatctatg
ttaaaagatgacttaaagctaagcagcagtgaagacagtgatggagaacaggattgtgat
aagacaatgccaaggagtacaccaggaagtaactctgaaccttcacaccataatagtgaa
ggggcagataactccagggatgattctagcagccacagtggatctgaaagcagctctgga
tctgactcagagagtgaaagtagttccagtgacagtgaggcaaatgagccatcccagagt
gcatctcctgagcctgaaccacctcccacaaataaatggcaacttgataactggctgaat
aaagtaaatccacataaagtatcaccagcttcttctgtggacagtaatatcccatcatct
caaggctataaaaaggaaggccgagaacagggcacagggaatagctacacagatccaggt
ggtcctaaagaaacaagttctgctactcctggacgagactccaaaactgtccaaaaggga
tcagaaagtgggcgtgggaggcaaaagtctcctgcccagagtgacagcacagcacagagg
agaactgtagggaaaaaacaacccaaaaagactgagaaggcagctgctgaagagccccgt
ggaggcctgaagatagagagtgaaactcctgtagacatggctaccagcatgccctccagc
agacacaaagcggccaccaaaggctcaagaaaacccaatataaaaaaggagtccaaatct
tcccctcgaccttcagcagagaaaaagaaatacaagtcaacaagtaaatcttcccagaaa
tcaagggaaattatagaaacagatacctcatcctcagattcggatgaaagcgagagcctt
cctccttcctcacaaactcctaagtaccctgagagtaataggactcccgttaaaccctcc
tcagtggaggaagaagatagcttttttcggcaacgaatgttctctcctatggaagagaag
gaacttctttcacccctcagtgagcctgatgacaggtatccacttattgtgaagattgac
ctgaatctcttgactagaataccaggaaagccttacaaagaaacagagccacccaagggg
gaaaagaaaaatgtgccagaaaagcacacaagagaggctcagaaacaagcctcagagaaa
gtttccaacaaaggcaagaggaaacataagaatgaagatgataaccgagccaatgaaagc
aagaaacctaaaacagaggacaagaatatggcaggccacaagccatccagcaacaaagag
tcatctaaacagagtgcttctaaagaaaaagatttattgccttctcctgctgggcctgtt
ccttcaaaagatccaaaaacagagcatggctctcggaagaggactgttagtcagtcttct
tccttaaagtcaagtaataacagcaacaaggaaaatagtgccagcagcaaaaacagttcc
tccgcatcaaagcagaagaggactgaagggaagacttccagtagctctaaggaggtcaag
gaaaargctccaaatagttcttctaactgtcctccatctgcaccaactcctgatgcttct
aagcctcggagaacgaagcttgcctttgatgacagaaattattcagcagaccattattta
caagaagcaaaaaagctaaagcacaatgcagatgcattgtctgataggtttgagaaagct
gtatactatcttgatgctgtggtatctttcattgaatgtgggaatgcattagagaaaaat
gctcaggaatccaaatccccattccttatgtattcagaaacggtggagctcatcaaatac
actatgaagctaaagaattacttggcaccagatgctacagctgcagataaaagacttaca
gtgctttgcctgcgatgccagtctttgctgtacctgaggctcttcaaactgaagaaagaa
actgctctgaagtattcaaagacactgacagagcatctgaagaattcttacaataactct
caagcaccatcaccaggcttgggaagcaaagctgttgggatgccttcccctgtttctcca
aagctgtcaccaggcaattcaggaaattattcttctggagccagtagtgcttcagcaagt
ggttcttcagtgaccattccacagaggattcaccacatggcagccagctatgttcaggtt
acatccaacttcctctatgccactgaaatttgggaccaagctgaacagctttccaaagag
caaaaagaattctttgctgaactggataaagtaatgggccctctcatctttaatgcaagc
atcatgacagacctagttcgttacacccggcagggactgcactggcttcgccaggatgcc
aagttgatatcctga

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