Bos indicus (zebu cattle): 109562774
Help
Entry
109562774 CDS
T04792
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu00100
Steroid biosynthesis
biu01100
Metabolic pathways
Module
biu_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
109562774 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
biu01006
]
109562774 (FDFT1)
Enzymes [BR:
biu01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
109562774 (FDFT1)
Prenyltransferases [BR:
biu01006
]
Terpene biosynthesis
Squalene/phytoene synthase
109562774 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
HAUS4
Motif
Other DBs
NCBI-GeneID:
109562774
NCBI-ProteinID:
XP_019821348
UniProt:
A0A6P5C7E2
LinkDB
All DBs
Position
8:complement(7470090..7496656)
Genome browser
AA seq
471 aa
AA seq
DB search
MAAVACSTKAMSLFKRTLVLSPGAAPRGAGTPSRGCPLPPAAXPSKDRPRGEGVCCRLRS
PAAAGRSPQPHSSTSASPTAVCLLCPQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMR
HAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQVLEDFP
TISLEFRNLAEKYQTVIVDVCQKMGFGMAEFLDKRVTSEREWDKYCHYVAGLVGIGLSRL
FSASELEDPLIGEDTERANSMGLFLQKTNIIRDYLEDQREGREFWPQETWSKYVKKLGDF
AKPENIDLAVQCLNELITNTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLAACYNN
QQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTQQIISTI
RTQNLPNCQLVSRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagtcgcctgcagcaccaaggccatgtccctcttcaagaggactttggtgctg
agtcccggcgcggcacccaggggggcgggcaccccctcgcgcggctgccctttgcctccc
gccgcctgnccgtccaaggaccggccgcggggagagggcgtgtgctgccggctgcggagc
cccgcggcagccggccgctcgccccagccccactccagcacctccgcgtctcccaccgcc
gtgtgtctcctctgcccgcaggactcgctcagcagcagcttgaaaacatgctacaagtac
ctgaatcagaccagtcgcagtttcgcagctgttatccaggcgctggatggggaaatgcgc
catgcagtatgcatattttatctggttctccgagctttggacacactggaagatgacatg
actatcagtatagaaagaaaagtgccactgctacacaacttccactcatacctttatgag
cctgactggcggttcacggagagcaaggaaaaggaccgacaagtcctggaggacttccca
acgatctccctggagtttcgaaatctggctgagaaatatcagacagtgattgttgacgtt
tgccagaagatgggctttgggatggcggagtttctggataagcgcgtgacgtctgaacgg
gagtgggacaagtactgtcactatgttgctgggctagtgggaattggcctctcccgtctc
ttctckgcctcrgagttagaagaccccttaattggcgaagacacagagcgagccaactct
atgggccttttcctgcagaaaacaaacatcatccgtgattatctggaagaccagcgagaa
gggagagagttttggcctcaagagacttggagcaagtacgtgaagaagctgggtgacttt
gctaagccagagaacattgacttggctgtgcagtgtctgaatgaactcatcaccaacaca
ctgcaccacatccccgacgtcatcacctacctgtcacgacttagaaaccagagtattttt
aacttctgtgctattccacaggtcatggccattgctactttggctgcctgttacaataat
cagcaggtgttcaagggggtggtgaagattcgaaaagggcaagcggtcaccctgatgatg
gatgccaccaacatgccagctgtaaaagccataatacaccagtacatggaagagatttat
cacagaattcccaactctgacccctgttccactaaaacacagcagatcatctccaccatc
aggacacagaatctccccaactgtcagctggtctcgcggagccactactcgcccatctac
ctgtcgttcgtcatgctcctggcggccctgagctggcagtacctgagcaccctgtcccag
gtcacagaggactacgttcagaccggggagcactga
DBGET
integrated database retrieval system
