Bos indicus (zebu cattle): 109563077
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Entry
109563077 CDS
T04792
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain
KO
K08135
collagen type XV alpha
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
109563077 (COL15A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
biu00535
]
109563077 (COL15A1)
Proteoglycans [BR:
biu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109563077 (COL15A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
109563077
NCBI-ProteinID:
XP_019821827
UniProt:
A0A6P5C8K5
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Position
8:66772690..66876113
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AA seq
1372 aa
AA seq
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MAPRRDAQCWRLLLLLSTSALLPGVTRTRSATESASRGPLDLTELVGVPLPSSVSFVAGY
GGFPAYSFGPGANVGRPARTLIPSTFFRDFAISVRVKPSSPQGGVLFAITDAFQKVIYLG
LRLSGVEDGRQRVILYYTEPSSQVSREAAAFLVPVMTHKWNYFAVVVQGEEVTLLVDCEE
HGRVPFPRSSQALTFEPSAGIFVGNAGATGLERFIGSIQQLIIHPDPRTPEEMCEAEDSS
ASGETSGLQETDGVAEILEAVTYTQAPSKEAEVEPIHTPPTPSPASEDAELSGEPVPEGT
KETSNLSADPHSSPEQGSGEILNDTLEAVQTVDGSPTADTGSGDGVFLHVTEESPYTEDL
AATAAAGEAKVPISTAWEAEASSVPTGGLTLSMPIEDPGEGVTLGPENEEGSAATAAGEA
EEPVSIAREAEASSVPTGGLTLPMPTQDPGEMVTLSPISEEGSTTAAAATDVPLGTFEEE
EASGVPTNDLAFITPTVASEQGVTSGPGDEDLAAATTEEPLTAAGADALGSTPPEGPPLP
LPSVAPESGAPPGEAEEGFPGPPGPAVPTEPTVEVEAEGSGLGWGLDVSSGSGDLVHSEE
LLRGPPGPPGPPGLTXIPGKPGTDVFMGPPGSPGEDGPTGEPGPPGPEGKPGLDGASGLP
GXKGEKGARGPNGSVGEKGDPGNRGLPGPPGKTGQVGAPGVMGPPGPPGPPGPPGPGCTT
GLGFEDTEGSGSIRHLHEPISGPTASSGPKGEKGDRGPKGDRGMDGASIVGPPGPRGPPG
RIEVLSSSLTNITQGFMNFSDIPELAGPPGPEGMPGLPGFPGPRGPKGDTGVPGFPGLKG
EQGEKGEPGAILTGDIPLERLRGQKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGL
NGLKGAKGDRGVMIPGPPGLPGPPGPPGXPGAVINIKGAVFPVPVRPHCKTPVGTTYSGN
SELITFHGVKGEKGSWGLPGSKGEKGDQGPQGPPGPPVDPAYLRHFLNSLKGENGDRGIK
GEKGDSNSGFSGFSVSGPPGLPGSPGLVGQKGEAVVGPQGPPGAPGLPGPPGFGRPGSPG
PPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTTFSNMDDMLQKAHLVIEGTF
IYLKDSTEFFIRVRDGWKKLQLGELIPIPDDSPPPPALSSNPHQPQLSLTSISNVNYGRP
ALHLVALNTPFSGDIRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTVVRKAERYSLPIV
NLKGQVLFNNWDSIFSGHGGQFNTHIPIYSFDGRDVMTDPSWPQKVIWHGSSTHGVRLVD
QYCEAWRTADMAVMGLASPLNTGKILDQKAYSCANRLIVLCIENSFMTDARK
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaggagggacgcacagtgctggcgcctgcttttgctgctttccacctccgcg
cttctgcccggtgtcactcggacccgctccgcgacagaatcggcttcccggggccccctg
gacctcacggagctcgtcggcgtcccgctgccctcctctgtgtcctttgtagctggctat
ggtggcttcccagcctacagctttgggcctggtgccaacgtcggccgcccggccaggacc
ctcatcccgtccaccttcttcagggacttcgccatcagcgtgagggtgaagcccagcagc
ccccaaggcggtgtgctctttgccatcacggacgccttccagaaggtcatctacctgggc
ctgcggctctcgggcgtggaggacggccgccagcgggtcatcctctactacacggagcct
agctcccaggtgtcccgtgaggccgccgccttcctggtgcccgtgatgacccacaagtgg
aactactttgctgtggtcgtccagggcgaggaagtgaccctcctcgtggactgtgaggag
catggccgcgtcccctttccaaggtcctcccaggccttgaccttcgagcccagtgcggga
atctttgtgggcaatgcaggagctacggggctggagagattcattggttccatacagcag
ctcatcatccaccctgaccccaggactcccgaggagatgtgtgaagctgaagactcctcg
gcatctggagagaccagcgggctccaggagacggatggagtagctgagatcttggaagca
gtcacctacactcaagccccatctaaagaagcagaagttgaacccatacacacacctcca
actccatcccctgcctctgaggatgcagagctttctggtgaacctgtacctgaagggacc
aaggaaaccagcaacttgagtgctgacccgcacagcagccccgagcaagggtctggtgag
atcctgaatgatacactggaggcagttcagactgtggacggttccccgactgcagacact
ggstcrggggatggggtcttccttcatgtcactgaagagagtccatacacagaagatttg
gcagcaacagcagcagccggggaggccaaggtgcccatcagcactgcttgggaagcagag
gccagcagcgtgcccaccggaggactgaccctctccatgcccattgaggaccccggggag
ggggtcactctgggtccagaaaacgaagaaggttcagcagcgacagcagcaggggaggcc
gaggagcccgtgagcattgccagggaagcagaggccagcagcgtgcccaccgggggactg
acccttcctatgcccacacaggaccctggagaaatggtcactctgagtccaatcagtgaa
gaaggctctacaacagcagcagctgcaacagatgtgccactcggcacttttgaggaagaa
gaggccagcggggtccccaccaacgacctggctttcatcacaccgacagtggcctccgag
caaggggtcacttctggtcctggcgatgaagacttagcagcagccacgacagaggagccc
cttactgcggctggggcagacgcattgggcagcactccccctgaggggcccccactcccc
ttaccctcagtagcccctgaaagcggggcccctccgggtgaagctgaggaggggtttcct
ggcccccctggacctgctgtgcctactgaacccacggtggaagtggaggctgagggctcc
ggcctgggctggggcttggatgtcagctctggctctggtgacctggtgcacagtgaggag
ctgttaagaggtcctccaggtcccccgggcccacctggcttaacnnngatcccaggaaaa
ccaggaactgatgttttcatgggaccccctggatctcctggagaggatggacctactggt
gaacctggtcccccgggccccgagggaaaacctggacttgatggagcrtctggtcttcck
ggaatraaaggagagaagggagctagaggacctaatggctcagttggtgaaaagggtgat
cctggcaacagaggcttaccaggacccccagggaaaactggacaagttggtgctcctggg
gtcatgggacccccagggcctcctggaccccctgggcccccaggccctggatgcacaaca
ggacttggatttgaggatactgagggctcaggaagcatcaggcacttacacgagcccatc
tctgggccaacggcttcaagtggtcccaaaggagaaaaaggagaccggggacctaagggt
gacagagggatggatggagccagcattgtgggaccccctgggcccagggggccaccaggg
cgcatcgaggtcctgtctagttctttgaccaacatcacccaaggattcatgaatttctcg
gacattcctgagcttgccgggcctccgggccccgagggcatgcctgggctgccaggattc
ccaggcccaagaggtccaaaaggtgacactggcgtacctggatttccaggactaaaagga
gaacagggtgagaagggagagccaggtgccatcctgacgggggatattcctctggaaagg
ctgaggggccaaaagggtgaacctggagagcacggagccccgggaccaatgggacccaaa
ggaccaccaggacacaaaggagaatttggcctccctggacgacctggtcgcccaggactg
aatggcctcaaaggtgccaaaggagatcgaggggtcatgatcccgggtccacctggccta
cctggccctccaggccccccaggacyaccgggagctgtgattaacatcaaaggagctgtc
ttcccagttccagtccggccacactgcaaaacgccagttggtaccacgtattctgggaat
tcagaactcatcacttttcatggtgttaaaggagaaaaaggatcctggggccttcccggc
tcaaaaggagaaaaaggygaccagggaccccagggaccaccaggccctcctgtggatcca
gcttacctgaggcactttctgaacagcttgaagggggagaatggagacaggggaatcaaa
ggagaaaaaggagactctaacagtggcttctctggcttctctgtgtcagggccaccgggc
ctgccaggaagtccaggtctggtgggccagaaaggggaggccgttgtcgggccccaggga
cccccaggtgctcctggcctgcctgggccacctggctttgggagacctggttcccctggg
ccaccaggacccccgggaccaccaggacctccagctatcctaggagcagctgtggccctt
ccaggcccacctggccctccaggacaaccagggcttcccggatccaggaacctggttaca
acatttagcaacatggatgacatgttacagaaagcacatttggtcatagaagggacattc
atctacttgaaggacagcaccgagtttttcattcgggtcagagatggttggaaaaaatta
cagctgggagaactgattcccattccggatgacagccctcctccccctgcactttccagc
aatcctcatcagcctcaactttcactgacgtctatttcaaatgtcaattacggcagaccc
gcactacacttggttgctctgaacacgccgttttctggggacattcgagctgatttccag
tgcttccagcaggccagggctgcaggactgttgtccacctaccgagcattcttatcctcm
catttgcaagatctctccacagttgtaaggaaagcagagagatatagccttccaatagtg
aacctcaagggccaagtactttttaataattgggactcaattttttctggccacggaggt
cagttcaatacacacattccaatatattcctttgatggccgagatgtaatgacagatcct
tcctggccccagaaggtcatttggcatggctccagcacccacggagtccgtcttgtggat
cagtactgtgaagcgtggagaaccgccgacatggcagtcatgggcttggcctccccgctg
aacacggggaagattctggaccagaaagcatacagctgtgctaacaggctaattgtgctg
tgtatcgaaaacagtttcatgacagatgcgaggaagtaa
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