Bos indicus (zebu cattle): 109563381
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Entry
109563381 CDS
T04792
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu04820
Cytoskeleton in muscle cells
biu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109563381 (COL27A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
109563381 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
biu00536
]
109563381 (COL27A1)
Glycosaminoglycan binding proteins [BR:
biu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109563381 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
109563381
NCBI-ProteinID:
XP_019822350
UniProt:
A0A6P5C9T8
LinkDB
All DBs
Position
8:108710459..108862001
Genome browser
AA seq
1841 aa
AA seq
DB search
MGAGSARGTRGTAAAAAAQGGGFLFTWILVSLTCHLASTQGAPEDVDVLQQLGLSWTKAV
GGRSPPPPGVIPFQTGFIFTQRARLQAPTAAVLPASLGTELALVLSLCSHRVNHAFLFAV
RSRKRKLQLGLQFLPGKTVVHLGPRRSVAFDLDVHDGRWHHLALELRGRTVTLVTACGQH
RVPVSLPFHRDPALDPDGLFLFGKMSPHAVQFEGALCQFSIYPVAQVAHNYCTHLRKQCG
QADTYRPQLGPFFPRDSGTLLTFQTDLARLGLENLTTATPALGSRPAGRGPGVTVVPAVP
VKPMRTSTTRPPQPITSHPAWTPLSPAKLSVSEGPPPVSPVSPASSPRPVQPLQKNTATK
TSKSHPATPSALSPSIAPVRSPRPTQKTALPAFTKPAPPTKKPVLPTSQPIPAKVSRPTV
KPIQRNPGMPRLPPPSARPLPPAAASSKKPLPPVVQAEAKMSSRASEPXPAHTSTHRPPP
PTVPPPSPVPSPSPPRTARPPATAMPPTLAPGSASTGSKKPTGSEATKKARPRKPVPLRS
GKAARDVPLNDPTRGSSPRQPRTRQQTTPAPALAPARFLASSPQPMSTGYSFFHLVGPTP
FLLLMGPPGPKGDCGLPGPPGLPGLPGPPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPG
LSPGKAHDGAKGDMGLPGLTGNPGPLGRKGQKGYPGPTGHPGEQGQPGPEGSPGAKGYPG
RQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERG
PPGLDGNPGELGLPGPPGVPGLIGDMGTLGPIGYPGPKGMKGLMGNVGEPGLKGDKGEQG
VPGVSGDAGFQGDKGSQGLQGFPGARGKPGPVGKVGDKGSIGFPGPPGPEGFPGDIGPPG
DNGPEGVKGKPGARGLPGPRGQLGPEGDEGPMGPPGVPGLEGQPGRKGFPGRPGPDGLKG
EPGDAGRPGPVGEQGLLGFVGLVGEPGIMGEKGDRGMMGPPGAPGPKGSMGHPGIPGVVG
NPGEPGPPGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSKGLKGPPGPQGRLGQPGQQG
VAGERGHLGTRGFPGLRGPSGPPGAKGLPGEPGPQGPQGPIGPPGEMGPKGPPGALGELG
LPGEAGMKGDLGPLGIPGEQGLIGQRGEPGLEGDSEPAGPDGLKGDRGDPGPDGERGEKG
QEGLKGEDGPPGPPGITGIRGPEGKPGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPG
TPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIMGPLGPPGPKGEKGEQGEDGKAE
GPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGNPGQQGQPGHPGPRGRLGPKGSK
GEEGPKGKQGKAGAPGRRGIQGLQGLPGPRGVVGRQGPEGVAGPDGLPGRDGQAGQQGEQ
GDDGDPGPMGPAGKRGDPGVAGLPGAQGPPGFKGESGLPGQMGPPGKRGTEGGMGLPGNQ
GEPGSKGQPGDSGEMGFPGMAGLFGPKGPQGDVGFKGIQGPRGPPGLMGKEGIIGPLGIL
GPSGRQGPKGDKGSRGDLGLQGPRGPPGPRGQPGPPGPPGSTIHFQQDDLGAAFQTWMDT
SGALRAEGYSHPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQK
MVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSEV
TQQITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFSPEVSMDGCKIQDGRWH
QTLFTFRTQDPQQLPIVGVDNLPPASSGKQYRLEVGPACFL
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgggatcggcgcgggggacccgaggcacagcagcggcggcggcggcgcaaggg
ggggggtttctcttcacctggatcttagtctcgctcacctgtcacctggcctccacccaa
ggagctcctgaagatgtggacgtcctccagcagctgggcctcagctggacgaaggcggtg
ggcggccggagccccccgcccccaggggtcatcccgttccagacgggcttcatcttcacg
cagcgggcccggctccaggctcccacggctgccgtcctccccgcctccctgggcacggag
ctggcrctggtgctcagcctctgctcccaccgggtgaaccatgccttcctcttygccgtc
cgcagccggaagcgcaagctgcagctgggcctgcagttcctccccggcaagactgtggtc
cacctggggccccggcgctccgtggccttcgacctcgacgtccacgacgggcgctggcac
cacctggccctggagctccgcggccgcacggtcaccctggtgacggcctgcgggcagcac
cgggtgcccgtctcgctgcctttccacagggacccagcgctcgaccctgacggcttgttc
ctctttgggaagatgagcccgcacgcggtccagttcgagggggccctgtgccagttcagt
atctaccccgtggcgcaggtcgctcacaattactgtacccacctgagaaagcagtgtgga
caggctgacacctaccggccccagctgggacccttcttcccccgagactctggcacactc
ctcaccttccagaccgacctcgcccggttgggcctggagaatctgaccactgccacgcca
gccctggggtcacggccggcaggcagggggcctggggtgactgtggtgcctgctgtgccc
gtcaagcccatgaggactagcaccacacgcccrccccagcccatcacatcccatccagcc
tggacccctctgtcccctgccaagctatcagtcagtgaagggcctcctcccgtgtccccg
gtctctcctgccagctcccccagacctgtccagccattgcagaagaacacagccactaag
acctccaaaagtcaccccgccacaccttcagccctttctccttcaattgccccagtcaga
agcccccgccccacccagaagacagctctgcctgccttcacaaagccagccccacccacc
aagaagccggtgctacctacttcccagcccattcctgccaaagtctcccgtcccacagtg
aagccgatccagaggaaccccggcatgcccagactcccgccacccagtgcccggccccta
cctccagctgctgcctcctctaaaaagcctttgcccccagtagtccaggctgaggccaar
atgagtagtcgtgccagtgagccgrctcctgcccataccagcacacacagacctccccca
cccacagtcccgcccccatcacctgtccccagtcctagccctcccaggaccgctcggcca
ccrgccacagcgatgcctcccactctcgctcctggttcagcctccactggaagcaagaaa
cccactggatcagaagccacaaagaaagccagaccccggaagcccgtcccactcagatct
gggaaggcagcccgggatgtcccgctaaacgatccaacaagggggtccagccccagacag
ccccggaccaggcagcagaccaccccggccccagcgctggccccggcgcgattcctggcc
tccagcccccagcccatgagtactggctattcgttcttccacctggtgggacccacacct
ttcctgctgctgatgggacctccaggacccaagggagactgtggtttgccgggtccccct
ggactgcctgggcttcctggaccccctggcgcacggggccctcggggtcctcctgggcct
tatggaaatccaggccttcctggcccccctggagccaaaggacagaaaggggaccccggg
ctctcaccaggaaaggcccacgatggggcaaagggcgacatgggcttgcccgggctcact
gggaatccaggaccccttggacgaaagggacagaagggttatcctggaccracggggcac
cccggagaacaggggcagccaggacccgagggtagcccaggggccaaaggttaccctggc
aggcaggggctgcctggacctgtaggagaccctgggcccaaaggtagccggggctacatt
ggactcccggggctcttcggcctgccagggtctgatggagagcgaggtctgcctggcgtt
cctggcaagaggggcaagatgggtaggccggggtttcctggagactttggggaaagaggc
cctccaggactggatggaaaccctggagaactgggcctgccagggcccccaggagtcccc
ggcctcattggcgacatgggaacattgggtccgattggctacccaggacccaagggcatg
aagggactgatgggaaacgtgggggaacccggactgaaaggtgataagggtgaacaaggg
gttccaggtgtgtcaggagacgccggattccaaggagacaaggggagccagggcttgcaa
gggttccctggcgcacgggggaagccagggccagtgggcaaagttggagacaaaggatcc
attgggtttcctgggcccccgggacctgagggattccctggagacattggtccccctggg
gacaacggcccagaaggygtgaagggtaagcctggagctcgaggcctgccaggaccccgt
gggcagctggggcccgagggagatgaggggcccatggggccaccaggggtccctggcttg
gagggtcaacccggcaggaaggggtttcctggaagacctggcccggatggcttgaagggc
gagccaggcgatgctggacggccggggcctgtgggtgagcagggacttctgggattcgtt
ggtctggtcggagagccaggaatcatgggagaaaagggtgaccggggcatgatgggaccc
ccaggcgcgcccggacccaaggggtcgatgggccatcctggaatcccaggtgtggtggga
aacccgggagagcctggacctccgggtcctccaggatctcgaggcccaccgggcatgagg
ggagcaaagggacgccggggaccccgaggaccrgacggaccagctggggagcaggggtcc
aagggcctgaagggcccgccaggaccacagggcagactgggccagcccgggcagcagggc
gtggctggcgagcgagggcacttgggcacacgaggctttcctggcctccggggtccttcc
ggtcccccaggcgccaagggcctcccaggagaaccgggccctcagggaccccaggggcca
attggccctcccggagagatgggacccaagggaccaccaggtgcattgggagaactgggc
cttcctggggaagctggcatgaagggtgaccttgggcctctgggcatccctggggagcag
ggcctcattgggcagcggggagagccaggcctcgagggtgacagtgaacctgcagggcct
gacgggctgaagggggacaggggtgaccccgggcctgacggtgaacgtggcgagaagggc
caagagggactgaagggcgaggacgggccccccggcccccctggcatcactggcatccgg
ggtcctgaaggaaaaccagggaagcaaggcgagaagggccggacgggagccaagggwgcc
aagggctaccaaggacagctgggtgagatgggcgtccctggagaccccggaccccctggc
accccaggccctaaagggtcccggggcagcctgggaccaacgggtgctccaggacggatg
ggggcccaaggagagccgggactggctggttacgacggacacaaaggcatcatgggaccc
ctcggacctcctggaccaaagggtgaaaagggggagcagggcgaggacggcaaggctgag
gggccccctggaccacctggagatcggggccctgtgggtgatcgaggagaccgtggcgaa
ccaggggaccctggataccctggacaggagggtgtacaaggcctccgtggaaatccaggc
cagcagggccaacccgggcatccgggaccccggggacggctgggccccaaaggatcgaaa
ggggaagaggggccaaagggaaagcaaggcaaggctggggcgccaggacggagggggatc
cagggcctgcaggggctcccagggcctcggggcgtggtggggagacagggccccgagggt
gttgctggaccagatgggcttcctggccgcgatggtcaagcaggacagcagggggagcaa
ggagatgacggggaccccgggcccatgggccctgctgggaagagaggagatccaggtgtg
gctggcttgcctggagcacaggggcccccaggattcaagggtgaaagtgggttgcctggg
cagatgggaccccctggcaagcgagggacagaaggcggcatggggcttcctgggaaccag
ggggagcctggatccaaaggccagccgggtgactctggtgagatgggattcccaggaatg
gctggcctctttggacccaagggcccccaaggagacgtcggtttcaaaggcatccagggc
cctcgggggcctcctggcttgatgggaaaggaaggtatcatcgggcccctgggaatcctg
ggaccttcgggacgccagggtccaaagggcgacaaaggcagccgcggggacttgggattg
caaggtccgaggggtcctcccggtcccagagggcagcccggcccaccgggtcctccaggg
agcactatccacttccaacaagatgaccttggggcagctttccagacgtggatggataca
agtggagcactgagagcagagggttacagccatccggaccggctggtgctggaccaggga
ggggagatcttyaaaaccttacactacctcagcaacctcatccagagcattaagacgccc
ctgggcaccaaagagaaccccgcccgggtctgccgggacctcatggactgtgagcagaag
atggtggatggtacctactgggtggatcctaaccttggctgctcrtccgacaccatcgaa
gtctcctgcaacttcacacatggtggacagacgtgtctcaagcccatcacggcctccaag
gtggagtttgccatcagccgggtccagatgaatttcctgcacctgctaagctcggaggtg
acacagcagatcaccatccactgccttaacatgaccgtgtggcaggagggcaccgggcag
accccagctaagcaggctgtgcgcttccgggcctggaacgggcagatctttgaggccggg
ggtcagttcagtccagaagtgtccatggatggctgcaagatccaggatggccgctggcat
cagacgctcttcaccttccggacccaggacccccagcagctgcccattgtcggcgtggac
aacctccctcccgcctcatcagggaagcagtaccgcctcgaagttggacctgcatgcttc
ctctga
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