Bos indicus (zebu cattle): 109570185
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Entry
109570185 CDS
T04792
Symbol
RC3H1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
biu
Bos indicus (zebu cattle)
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
biu03000
]
109570185 (RC3H1)
04121 Ubiquitin system [BR:
biu04121
]
109570185 (RC3H1)
Transcription factors [BR:
biu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
109570185 (RC3H1)
Ubiquitin system [BR:
biu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109570185 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
109570185
NCBI-ProteinID:
XP_019831533
UniProt:
A0A6P5D0G8
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All DBs
Position
16:complement(52529970..52565238)
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AA seq
1098 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSTAILQEE
GAVDLPSRKTPALPNGIVSAGNAVTQLIPRGTDPSYESSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISTLPVNPHPVPPRGPTELPPMPVTKPLQMVARGSQLYPAQQADVYYQDPRGAA
PPFESAPYQQGMYYAPPPQCVSRFVRPPPSAPEPGAPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYAREEIFRESPIPIEIPPAAVPPYVPEPRERYQQMEGYYP
VAAHPTQIRPSYNREPPYSRLPPPPQPHPSLDELHFLDEDLKVAGKYKGNDYSQYSPWSC
DTIGSYIGTKDAKPKDVVAAGSVEMMNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPT
VSRFGAISRTSKTIYQGAGPMQAMAPQGAPTKSINISDYGPYGTHGGWGGSPYSPHQNIP
SQGHFSERERISMSEVASHGKPLPSAEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVL
QREANTLAGQSQPPPPPPPKWPGMISSEQLSLELHQVEREIGKRTRELSMENQCSLDVKS
KLNTSKQAENGQPEPQNKVPAEDLTLTFSDVPNGSALTQENISLLSNKTSSLNLSEDPEG
GGDNNDSQRSGVTSSSTP
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagctccacagtggacggatttcctctcctgcccaatttgcactcagact
tttgacgaaacaattagaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaacaaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgaactcctcccagtgaactcagcattgttgcagctagtgggtgctcaggttcctgag
cagcagcccattactttgtgtagtggggttgaagacacaaaacattatgaggaagccaag
aaatgtgtagaagaattagcactgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagtactactcagagtgttctgagtcgcccaatgcagaggaagctagtgacgctg
gtccactgccaactagtggaagaagaaggcaggattcgtgccatgagggcagcccgatct
ttaggtgaacgaacagttacagagctcattctccaacaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagagctagaggctgccagttccttggaccagcaatgcag
gaggaagccctaaagctggttctcctggccttagaagatggttctgctttgtctagaaaa
gtattggttctctttgtggtgcagagattggagccacggtttcctcaagcctctaaaact
agcattgggcatgttgtccagctcctttatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttagaacctatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacca
gaccagtggtcctctttgctgtatggggaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaacaattgct
ctccagcggactggagatccagcaaacttgaatcgactaagaccccatttggagctatta
gcaaacattgaccctagtccagatgctcctcctcctacttgggaacagctagaaaatggg
ttggttgctgtgcgtacagtggtacatgggctggttgattatatccagaatcacagcaaa
aaaggaacagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga
gacatgaagcagagaggaggatgccctcggggggccagctgtacatttgcacactcacag
gaggaactggaaaaatttcgtaaaatgaacaaacgmctggttcctagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcaacagctatccttcargaagaa
ggggcagtggatctgcctagcagaaaaacccctgctctgccgaatgggattgtatcagca
gggaatgcagtaacacaactgattccacgagggacagaccccagctacgaatccagtctg
aaaccaggaaagatcgatcacttgagcagtagtgcccctgggtcccctcctgacttgcta
gaatcagtccctaagagtatttctaccttgcctgttaatccgcatcctgtacctccaaga
ggaccaacagagctgccccctatgcctgtcactaaacctcttcagatggtggcgcgaggt
tctcagctctatccagcacagcaggctgatgtttattaccaggatcctcgaggagccgct
ccgccgttcgaatcagcaccttatcagcagggtatgtactatgctccacctccacaatgt
gtgtctcgttttgtccgacctccaccatctgctcctgaacctggtgctccctacttggat
cattatccaccatacctccaagatcgtgtagtaaactcacagtatggcacacagccacaa
cagtaccctcctatgtacccaccacactatgatggccgtcgagtatacccagctcagtct
tatgcaagagaggagattttccgagaaagtcctatacccattgagattccacctgcagca
gtgccaccctatgtaccagaacccagagaaagataccaacaaatggaaggttactatcca
gtggctgcacacccaactcagatcagaccttcatacaacagagagcctccgtacagtcgg
cttccgcctcctccccagccccatcctagtctagatgagttacattttttggatgaagac
ttgaaggtagctgggaaatacaaaggaaatgattatagccagtattcaccctggtcatgt
gacactattggctcctacattggaaccaaagatgcaaaacctaaagatgttgtggcagca
gggagtgtggaaatgatgaatgtggagagtaaaggaatgagagaccagcgattggacctt
cagagaagagcagcagaaaccagtgatgatgatctcatcccatttggagaccgaccaaca
gtatctcggtttggtgccatttctcgaacttccaaaacgatctatcagggtgctggccca
atgcaggctatggcacctcagggagctcccacaaaatctattaacatttcagattatggt
ccatatggaactcatggtggctggggaggttctccatattcacctcatcaaaacatacct
tctcagggacacttcagtgagagggagagaatatctatgtcagaagtggctagtcatgga
aaaccccttccgtctgctgagagggaacagctacgactagaattacagcagctaaaccat
caaattagccaacagacccagctacgtggactagaggctgttagtaacagactggtgttg
cagagggaggcgaacaccttggcaggccagtcacagcccccaccaccaccacctccaaaa
tggcctggaatgatttcaagtgagcagttgagcttggaactgcaccaggtggaaagggaa
attgggaagagaacccgggaactgagtatggagaaccagtgttctctggacgtgaaaagc
aaattgaatacaagtaagcaagcagaaaatggacaaccagaaccacaaaataaggttcca
gctgaggaccttacgttaacattcagtgacgtgcctaatggatcagcattgacacaagag
aatatcagcctcctgtccaacaagaccagctctctgaacctgtcagaggaccctgaggga
ggaggggacaataatgactcccagagatcaggagttacatccagttctactccataa
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