KEGG   Bos indicus (zebu cattle): 109570476
Entry
109570476         CDS       T04792                                 
Symbol
KDM5B
Name
(RefSeq) lysine-specific demethylase 5B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
biu  Bos indicus (zebu cattle)
Brite
KEGG Orthology (KO) [BR:biu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:biu01009]
    109570476 (KDM5B)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:biu03036]
    109570476 (KDM5B)
Enzymes [BR:biu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     109570476 (KDM5B)
Protein phosphatases and associated proteins [BR:biu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     109570476 (KDM5B)
Chromosome and associated proteins [BR:biu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    109570476 (KDM5B)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD zf-C5HC2 PHD_2 zf-PHD-like DDE_Tnp_IS66
Other DBs
NCBI-GeneID: 109570476
NCBI-ProteinID: XP_019832022
UniProt: A0A6P5D4Z6
LinkDB
Position
16:complement(77735749..77777922)
AA seq 1386 aa
MGFAPGKAVGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLSTDTKDKEYKPHGIPQRQS
VQPAETCPPARRAKRMRAEAMNIKIEPEETTEARTHNLRRRMGCPAPKCENDKDVKSSVK
QEPVEKKECVTESEKEKPKSRAKKTTNAVDLYVCLLCGSGSDEDRLLLCDGCDDSYHTFC
LIPPLHDVPKGDWRCPKCLAQECSKPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPV
HMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKVKLSPEEEEYLDSG
WNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKT
WYGVPGYAAEQLETVMKKLAPELFISQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEF
VITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMAS
KADVLDVVVASTVQKDMAIMIEDEKALRETVRKLGVIDSERMDFELLPDDERQCVKCKTT
CFMSALSCCCKPGLLVCLHHVQELCSCPPYKYKLRYRYTLDDLYPMMNALKLRAESYNEW
ALNVNEALEAKINKKKSLVSFKALIEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLL
NGKRQTRYRSGGGKSHNQLTVNELRQFVTQLHALPCVLSQTPLLKDLLNRVEDFQQHSQK
LLSEEMPSASELQDLLDVSFEFDVELPQLAEMRVRLEQAHWLEEVQQACLDPSSLTLDDM
RRLIDLGVGLAPYSAVEKAMARLQELLTVSEHWDDKAKSLLKARPRHSLNSLAAVVKEIE
EIPAHLPNGAALKDSVQRARDWLQEVEALQAGGRVPVLDTLVELVTRGRCIPVHLPSLPR
LESLVAEVHVWKECAANTFLTKNSSYSLLEVLCPRCDIGLLGLKRKQRKLKDPLPSGKKK
SPRVESLSDLERTLMESRETASAMAALGEARAREMEALQSLRQANEEKLLSPVHDVEMRV
CVCQKAPAAPMVQCELCRDAFHTSCVAAPSIPQGPRVWLCPNCRRSEKPPLEKILPLLAS
LQRIRVRLPEGDALRYMIERTVSWQHRARQLLSSGHLKSLQDPVGSGLLCGRWQATAGQV
PETSKISQPPGPTSFSLPDDWDNRTSYLHSPFSTGRSCIPLHGISPEVNELLMEAQLLQV
SLPEIQELYQTLLAKPSPAQQADHSSPVRPGSEKSDGCRGKRDGASSLESKLKRRLEREG
LSSERWDRITKMRAPKKKRIKLSHPKDTDSLKLERECSYELAPSADTQSLPSDSSSSEQE
DSEDEDAICPAVSCLQPEGDEVDWVQCDGSCSRWFHQVCVGVSPETAEEEDYVCVRCAET
DVPGRR
NT seq 4161 nt   +upstreamnt  +downstreamnt
atgggctttgctcctggcaaagctgtgggctctcatataagaggacactacgagcggatt
ctgaacccctacaacttatttctgtctggagacagcttgaggtgtctgcagaagccaaac
ctgagcacagacacaaaggacaaggagtacaaaccccatggtattccccagaggcagtct
gtgcagcccgcggaaacctgccccccagcccgacgagcaaaacgcatgagagcggaggcc
atgaatattaaaatagaacctgaagagacaacagaagccagaactcataacctgagacgt
cgaatgggatgtccagctccaaagtgtgagaatgacaaagacgtgaaaagcagcgtcaag
caagaacctgttgaaaagaaagagtgtgttacagaaagtgagaaggaaaaacccaagagt
cgagctaaaaaaactaccaatgctgttgacctgtacgtctgcctcttgtgtggcagtggc
agcgacgaggaccggcttctcctgtgcgatgggtgtgatgacagctaccacaccttctgc
ctgatcccgccgctccatgacgttcccaagggagactggaggtgtcctaagtgtttggct
caggaatgcagtaagccacaagaagcattcggctttgagcaggcggccagggattatact
ctccgtacttttggtgaaatggcagatgcattcaaatctgattacttcaacatgccagtc
catatggttcccacggaactggtagagaaggaattttggcgactagtgagcactattgaa
gaggatgtcaccgtggaatatggagccgatattgcctcgaaggagttcggcagtggcttc
cctgtccgagatgggaaagtcaagctctcacctgaggaggaggagtatcttgatagtggc
tggaatctgaacaacatgccagtgatggagcagtctgttcttgctcacatcactgccgac
atatgcggcatgaagcttccttggctgtacgtgggaatgtgcttttcgtccttctgttgg
cacattgaagaccactggagctattcaattaactacctgcactggggtgagccaaagacc
tggtacggcgttcccgggtacgctgctgagcagctggagaccgtgatgaagaagctggcc
ccagagctcttcatctcccagcccgaccttctccaccagcttgtcaccatcatgaacccc
aacaccctgatgactcacgaagtgcctgtttaccgaaccaatcagtgtgctggggagttt
gtgatcacgtttccaagagcctaccacagcggtttcaatcaaggtttcaattttgctgag
gccgttaacttctgcactgttgattggctgcccttaggccggcagtgcgtggagcattac
cgtctgctccaccgctactgcgtgttctcccacgacgagatgatctgcaagatggcttcc
aaggcggatgtcctagacgttgtagtggcctcaactgttcagaaagacatggccatcatg
attgaggacgagaaggcactcagggaaactgttcgcaaattgggagtaattgattcggaa
agaatggattttgaactgttgccggatgatgagcgtcagtgtgtgaaatgcaaaaccacg
tgcttcatgtctgccctctcctgctgctgcaaacctggcctgcttgtttgcctgcatcac
gtacaggagttatgttcctgtcctccttataaatacaaactgaggtacagatacactctg
gatgacctctaccccatgatgaatgcactgaagcttcgagcagagtcttataacgagtgg
gccttgaatgtgaatgaagctttggaggctaagattaataagaagaaaagccttgtcagc
tttaaggctttgattgaagaatctgagatgaagaaatttccagacaacgatcttctacgt
cacctccgcttagtcacacaggacgcggagaaatgcgcctctgttgcccagcagctactt
aatggaaagaggcagacgagataccggtctggtggagggaaatcccacaatcagctgacc
gtgaatgagctccggcagtttgtgacccagctgcacgccctcccctgtgtcctcagtcag
acaccgctgctgaaggatctcttgaatcgtgtagaagatttccaacagcatagccagaaa
ctgctctctgaggagatgcccagtgcttctgagctgcaggacttgctggatgtcagcttt
gaatttgatgttgagctcccccagcttgctgagatgcgtgtccggctggagcaggcccat
tggctggaggaggtgcagcaggcttgcctggacccgagctccctcaccttagatgatatg
agacgtctcatagacctgggagtgggcctggccccatattcagccgtggaaaaggctatg
gcgcggcttcaggaactgctcacagtatcagagcactgggatgacaaagccaagagtctc
ctcaaggccaggcctcggcattcactgaacagcctcgccgccgtggtgaaggagattgag
gagatccccgcacacctgcccaacggcgcggcgctgaaagactctgtgcagagagccaga
gactggcttcaggaagtggaggccctgcaggctggaggacgtgtgccagtgttggacacg
ctggtggagcttgtcactcgaggccggtgtatcccggtgcatctaccctcgctgccgaga
ctggagtccctagtagctgaagttcacgtttggaaagaatgtgctgctaatacattcctg
actaagaactcgtcctattctctcctagaggtgctgtgtcctcgatgtgatattggcctt
ttgggattaaagaggaagcagagaaagttaaaggatcccttgccaagtggcaagaagaag
agtccccgtgtagagagtctgagcgacctggagagaacgctgatggaaagcagagagact
gcttcagctatggcagcactcggggaagctcgcgcacgagaaatggaagccttgcagtct
ctccgacaagccaatgaggagaaactgctgtcgcctgtgcacgatgtggagatgagagtc
tgcgtgtgtcagaaggctcccgcggcccccatggtccagtgtgaactctgcagggatgct
ttccacaccagctgtgtggcagctcccagcattccacagggcccccgagtctggctgtgt
cccaactgtcggaggtcggagaagcctccactcgagaagattctgcccctgctggcctcc
ctgcagcgcatccgcgtccgcctgcccgagggagacgcactgcggtatatgatcgagagg
accgtgagctggcagcacagagcccggcagctgctctcgtcagggcacctcaagtccttg
caggacccagtgggctcaggactgttgtgtggcaggtggcaggccacagcaggacaggtg
ccagagaccagcaagatatctcagcctcctggccccacgtccttctccttgcccgacgac
tgggacaacagaacctcctatttacactctcctttctccactggtcggagctgtatcccc
ctccatggtatcagcccagaagtgaatgagctgctgatggaggcccagctgctccaggtg
tcccttcctgaaattcaggaactctaccagacgttacttgcaaagccgagccctgcgcag
caggctgaccacagctctccagtgagacccggcagtgagaagagtgacggctgccgaggg
aagcgagatggagccagcagcctcgagagcaagctgaagagacgcctggaaagagaaggc
ctctccagtgagcggtgggatcgaatcaccaaaatgcgggcccccaaaaagaagagaatc
aaactgagccaccccaaggacacggacagtctcaagttagagagagagtgtagctatgag
ttggccccctctgccgacacgcagtccctgccctcagactcgtcctcctcggagcaggag
gactctgaggacgaggacgccatctgcccggccgtgagctgcctgcagccagaaggagat
gaggtggactgggtccagtgtgatggcagctgcagtcggtggttccatcaggtctgtgtt
ggtgtctctcccgagacggccgaggaggaggactacgtgtgcgtgcgctgtgcggagacg
gacgtgccgggccggagataa

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