Bos indicus (zebu cattle): 109572798
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Entry
109572798 CDS
T04792
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03030
DNA replication
biu03410
Base excision repair
biu03420
Nucleotide excision repair
biu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109572798 (LIG1)
03410 Base excision repair
109572798 (LIG1)
03420 Nucleotide excision repair
109572798 (LIG1)
03430 Mismatch repair
109572798 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
biu03032
]
109572798 (LIG1)
03400 DNA repair and recombination proteins [BR:
biu03400
]
109572798 (LIG1)
Enzymes [BR:
biu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109572798 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
109572798 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
109572798 (LIG1)
DNA replication proteins [BR:
biu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
109572798 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
109572798 (LIG1)
DNA repair and recombination proteins [BR:
biu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
109572798 (LIG1)
NER (nucleotide excision repair)
Other NER factors
109572798 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
109572798 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
109572798
NCBI-ProteinID:
XP_019835463
UniProt:
A0A6P5DAW5
LinkDB
All DBs
Position
18:complement(54718907..54746215)
Genome browser
AA seq
958 aa
AA seq
DB search
MERLGPQPEGLLVTSPALLCGCRNRKLVTSGEEEWGENSDTIMQRSIMSFFQPKKEGKXK
KPEKETAKSIRETESPPKVALKERNRVVSEGDSPVKRPGRKATRVLGSEGEEEEEEAPTT
PRSQKPASDSPQASPPSPVTLPESSPSHSKPSPAVASPSGIPKRRTARKQLPKRTFQDVL
KEQGEDKDPETKKKKEEEAETPIESLPEPEGDDKEEVEGGDQPTTPPEPRKTSTESPTES
VSEPGVTVKQEPQEDGQAQPPPKTPKTLSSFFSPRKPAVKKEAKEEGPGALRKDEIKGHV
DPASYNPAKNNYHPIEDACWKAGQRVPYLAVARAFEKIEEVSARLRMVETLSNLLRSVVA
LSPADLLPVLYLSLNRLGPPQQGLELGIGEGILLKAVAQATGRQLESVRAEVAEKGDVGL
VAESSRSTQRLVLPPPALTAAGVFAKFRDIAQLAGSASTTKKIDVIKGLFVACRHSEARF
IARALSGRLRLGLAEQSVLAALAQAVSLTPPSQECPPAVVDAGKGKTAEARKTWLEEQGM
ILKQTFCEVPDLERIVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEA
AFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRYPDIISRIPKIKLPSVTSFILDTE
AVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQL
LRENFVETEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHN
WLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGRYGGFLLASYDEESEEFQAICKLGTGFS
DEELEEHHQRLQALVLPTPRSYVRADGAVAPDHWLDPSDVWEVKCADLSLSPIYPAARGL
VDSEKGISLRFPRFIRVREDKKPEQATTSAQVAGLYKKQSQIQNQQGAEPDSEQEEFY
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcttggaccgcaacccgaaggactcctggtgaccagtcccgctctactctgc
ggttgcaggaacaggaaactggtgaccagcggagaggaggagtggggagagaattctgat
accatcatgcagcgaagtatcatgtcatttttccagcccaagaaagagggcaaarcgaag
aagccagagaaggagacagccaagagcatcagagaaacagagtcccctccgaaggtggcg
ctgaaggagcggaatcgagtggtgtctgagggtgactctccagtgaagaggccagggagg
aaggcgacccgggtcctgggcagcgagggcgaggaggaggaagaggaagcccccaccacc
cccagaagccagaagcctgcttcagactctccacaggcctcgcctcccagtcctgtcaca
ctgcctgagagcagcccttcccactccaaaccctccccagcagttgcatccccatcaggg
atcccgaagcgtcgcacggcccggaagcagcttcccaaacggacatttcaagatgttctg
aaagagcagggcgaggacaaggatccagaaactaagaagaagaaggaggaagaagcggag
acaccaatagaaagcctcccagagcctgaaggggacgacaaggaggaagtggaaggtggg
gaccagcccacgacgccccctgagccccggaagacctccacagagtccccgacagaaagc
gtctcagagcccggggtgacggtgaagcaggaaccacaggaggatggccaggctcaaccg
ccccccaaaactccaaagaccctcagcagtttcttctccccccggaagccagctgtcaaa
aaagaagcgaaagaagaaggacctggtgctctgagaaaggacgagatcaagggacacgtg
gacccagcgagctataatcctgccaagaacaactatcaccccatcgaagatgcctgctgg
aaggcgggccagagggttccttatctggctgtggcccgggcgttcgagaagatcgaggag
gtctctgctcggctccggatggtggagacgctgagcaacctgctgcgctccgtggtggcc
ctgtcacctgctgacctcctgcccgtcctctacctgagcctcaaccgcctggggccgccc
cagcagggcctggagctcggcatcggagagggcatcctcctcaaggcagtggcccaggcc
acgggtcggcagctggagtccgtccgggccgaggtggccgagaagggtgatgtggggctg
gtggccgagagcagccgcagcacccagaggctcgtgctgcccccgcctgcgctcactgcc
gccggcgtcttcgccaagttccgggacatcgcgcagctggcaggcagcgcttccacaacc
aagaagattgacgtcatcaaaggcctctttgtggcctgccgtcactcagaggcacgtttc
attgccagagccctgagtggacggctgcgcctcgggttggctgagcagtcggtgctggcg
gccctcgcccaggccgtgagcctcacgccccccagtcaagaatgcccccccgccgtggtg
gacgccgggaagggcaagacggcagaagccagaaagacgtggctggaggagcaaggcatg
atcctgaagcagactttctgtgaggtacctgacctggagcggatcgtccccgtgcttctg
gaacacggcctggagcggctcccggagcactgcagactgagcccaggggttcccctgaaa
ccaatgttggcccaccccacccggggtgtcagtgaggtcctgaagcgctttgaggaggca
gctttcacctgcgagtacaaatacgacgggcagagggcacagatccacgttctggaaggc
ggggaggtaaagatcttcagcaggaatcaggaggacaatactggaaggtaccccgacatt
atcagccgcatccctaagattaaactcccatcggtcacatccttcatcctagacacagaa
gctgtagcttgggaccgggaaaagaagcagatccagccattccaagtcctcaccacccgc
aaacgcaaggaggtggacgcggcggagatccaggtgcaggtgtgtctgtatgccttcgat
ctcatctacctcaacggagagtccctggtacgtgagcccctctcccgacgccggcagctg
ctccgggagaacttcgtggagacggagggcgagttcgtctttgccacctccctagacacc
aaggacacggagcagatcgcagagttcttggagcagtcggtgaaagactcctgcgagggg
ctgatggtgaagaccctggacgtggacgccacctacgagatcgccaagaggtcacacaac
tggctcaagctgaagaaggactacctcgagggtgtgggcgacaccctggacctcgtagtg
attggtgcctacctgggcaaggggaaacgggccggccggtacgggggcttcctgctggcc
tcctatgacgaggagagcgaggagttccaggccatctgcaagctcggaactggcttcagt
gacgaggagctggaagagcaccaccagaggctccaggccttagtgctgcccaccccgcgc
tcctacgttcgggctgacggtgcggtggcccccgaccactggctggaccccagcgacgtg
tgggaggtgaagtgcgcggacctctccctgtcccccatctaccctgcggcccgaggcctg
gtggacagcgagaaggggatctccctccgcttccctcggtttattcgcgtccgtgaggat
aagaagccggagcaggccactaccagtgcccaggtggccggtctgtacaagaagcagagt
cagattcagaaccagcagggtgcggagccggactccgagcaggaagagttctactag
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