Bos indicus (zebu cattle): 109573365
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Entry
109573365 CDS
T04792
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
biu
Bos indicus (zebu cattle)
Pathway
biu03082
ATP-dependent chromatin remodeling
biu04714
Thermogenesis
biu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
biu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109573365 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
109573365 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
109573365 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
biu03000
]
109573365 (ARID1A)
03021 Transcription machinery [BR:
biu03021
]
109573365 (ARID1A)
03036 Chromosome and associated proteins [BR:
biu03036
]
109573365 (ARID1A)
Transcription factors [BR:
biu03000
]
Eukaryotic type
Helix-turn-helix
ARID
109573365 (ARID1A)
Transcription machinery [BR:
biu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109573365 (ARID1A)
Chromosome and associated proteins [BR:
biu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109573365 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
109573365
NCBI-ProteinID:
XP_019836090
UniProt:
A0A6P5DF84
LinkDB
All DBs
Position
2:complement(130549374..130618293)
Genome browser
AA seq
2286 aa
AA seq
DB search
MAAQVVPAFVSSLGNPPPPPPSELKKAEQQQQQQREEAGGEAAAAVAAERGEMKAAAGQE
SEGPAVGPPQPLGKELQDGAESNGGGGGGGAGGPGAEPDLKNSNGNAGPRPALNNNLTEP
PGGGGGGSSDGVGAPPHXXXAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPG
LAALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTP
GSGAAAAVXGSKPPPSSSASASSSSSSFAQQRFGAMGGGVPSAAAGGTPQPTSTPTLNQL
LTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAXXXSGGAQQRS
HHAPMSPGSSGGGGQPLVRTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGY
PGQPYGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPH
PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQPSPTPYPSQ
QSSTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRF
PPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGAL
SPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPA
AVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPS
GGQMHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGA
GGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQET
AVAMHVAANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANN
SAGMAASPEMMGLGDVKLTPASKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGE
PERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELA
TNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAG
SGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDP
TFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMG
DPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSNPDSG
MYSPSRYPPQQQQQQQRHDSYGNQFSAQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYG
PPAKRHEGEMYSVPYSAGQGQPQQQQLPPAQPPPANQQQAAQPPPQQDVYNQYGNAYPAT
AAAATERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQASAEVAQQGTMW
QGRNDMTYNYANRQSTGSAPQGPTYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPS
APVPPMTRPPPANYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGP
PVPASHIAPAPVQPPLIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKS
GLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGD
PGQRTLLDPGRFSKASSPAPVEGEEEEDLLGPKLEEEEEEEVIENDEEMAFSGKDKAASE
NSEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHF
ESKTELLPSRPHVPCPPVPRKYVTAVEGTPGTAEQEGPPPDGPPEKRITATMDDMLSTRS
STLTEEGAKSVEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAK
RCICVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQ
GVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEA
QDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRK
NPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQ
NPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVL
FLIGQS
NT seq
6861 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgtccccgccttcgtcagcagcctgggcaacccgccgccgccgccg
ccctcggagctgaagaaagcggagcagcagcagcagcagcagcgggaggaggcggggggc
gaggcggcggcggcggtcgcggcggagcgcggggaaatgaaggcagccgccgggcaggaa
agcgagggccccgccgtggggccgccgcagccactgggaaaggagctgcaggacggggcc
gagagcaatgggggtggcggcggcggcggagccggcgggcccggcgcggagccggacctg
aagaactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccg
cccggcggcggtggcggcggcagcagcgacggggtgggggcgcctcctcacnnnnnnnng
gccgccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgcc
gtcgccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaaagccctggc
ctggcagcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccag
cagaactcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgc
agcgcctaccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccg
ggctccggcgcggcggcggcggttnccggctccaagccgcctccctcttccagcgcctcc
gcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcgtt
ccctcagcggccgcagggggaaccccccagcccacctccacccccaccctcaaccaactg
ctcacgtcgcccagctcggcccgtggctaccagggctaccccgggggcgactacggcggc
gggccccaggacgggggcgccggcaagggcccggcggacatggcctcgcagtgctggggg
gctgctgctgctgcggcggcggcggcnnnnnnnncctcgggaggggcccaacaaaggagc
caccacgcgcccatgagccctgggagcagcggcggcggggggcagccgctcgtccggacc
ccgcagccatccagtccaatggatcagatgggcaagatgagacctcagccatatggcggg
actaacccatactcgcaacaacagggacctccatcaggaccgcagcaaggacatgggtac
ccagggcagccatatgggtcccagaccccacagcggtacccgatgaccatgcagggccga
gcgcagagtaccatgggcggcctctcttatgcacagcagattcctccttatggacagcaa
ggccccagcgggtatggtcagcagggccagactccatattacaaccagcaaagtcctcac
ccccagcaacagcagccaccctactcccagcagccaccatcccagaccccccatgcccaa
ccttcgtatcagcagcagcctcagtctcagccaccgcagctccagtcctctcaacctccg
tactcccagcagccgtcccagcctccccatcagccgtccccgactccatacccctcccaa
cagtccagcacccagcagcacccccagagccagcccccctactcacagccgcaggcacag
tctccttaccagcagcagcaacctcagcagccagcatcctcgacgctttcccagcaggct
gcgtaccctcagccccagtctcagcagtcacagcaaactgcctactcccagcagcgcttc
cctccaccgcaggagttatctcaagattcatttgggtctcaggcatcctcagccccctca
atgacctccagtaagggagggcaagaagatatgaacctgagtcttcagtcaagaccttca
agcttgcctgatctgtctggttcaatagatgatctccccatggggacagaaggagctctg
agccctggagtgagcacatcagggatttccagcagccaaggggagcagagtaatccagct
cagtctcccttctctccccatacctcccctcacctgcctggcatccgaggcccctccccg
tccccggttggctctcctgccagtgttgctcagtctcgctcaggaccactctcgcctgct
gcagtgccaggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatg
catccttctatgaaccaatcaagcattgcccaagatcgaggttacatgcagaggaacccc
cagatgccccagtacagttccccccagcccgggtcagccttatctccacgtcagccttcc
ggaggacagatgcacacaggcatgggctcctaccagcagaactccatggggagctatggt
ccccaggggagtcagtacggcccacagggaggctaccccaggcagccaaactataatgcc
ttgcccaatgctaactaccccagtgcaggcatggctggaagcatgaaccctatgggtgct
ggaggtcagatgcatgggcaacctggcatcccaccttatggcacactccctcccgggagg
atgagtcacgcctccatgggcaaccggccttatggccctaacatggccaatatgccacct
caggttgggtcagggatgtgtccccctcccgggggcatgaaccggaaaactcaagaaact
gctgttgccatgcatgttgctgccaactctatccaaaacagaccacccggctaccccaat
atgaatcaagggggcataatgggaactggacctccctatggacaggggattaatagtatg
gctggcatgatcaaccctcagggacccccatatcccatgggtggaaccatggccaacaat
tcagcaggaatggcagccagtccagagatgatgggtcttggggatgtcaagttaactcca
gcctccaaaatgaacaacaaggcagatgggacacccaagacggaatctaaatccaagaaa
tccagttcttctactacaaccaatgagaagatcaccaagttgtatgagctgggtggtgag
cctgagaggaagatgtgggtggaccgttatctggccttcacggaggagaaggccatgggc
atgacaaatctgcctgctgtgggtaggaaacctctggacctgtaccgcctctatgtgtct
gtgaaggaaattggtggattgactcaggtcaacaagaacaagaagtggcgggaacttgcg
accaacctcaatgtcggcacctcaagcagtgctgccagctccttgaaaaagcagtacatc
cagtgtctctatgcctttgagtgcaagatcgaacggggagaagaccctcccccagacatc
tttgcagctgctgattccaagaagtcccagcccaagatccagcctccctcgcctgcggga
tcagggtcaatgcaggggccacagacacctcagtcaaccagcagctccatggcagaagga
ggagacctgaagccaccaactccagcatccacgccgcacagccagatcccccccttgcca
ggcatgagtaggagcaattcagttgggatccaggatgcctttcctgatggaagtgacccc
acattccagaagcggaattccatgactccaaaccctgggtaccagcccagtatgaatacc
tccgacatgatggggcgcatgtcctatgagccaaataaggatccttacggcagcatgagg
aaagctccggggagcgatcccttcatgtcctcaggtcagggccccaatggcgggatgggg
gacccctacagtcgagctgccggccctgggctgggaaatgtggcaatgggaccgcgacag
cactatccctatggaggtccttatgacagagtgaggacggagcctggcataggacccgag
ggaaacatgggcactggggccccacagccgaatctcatgccttccaacccagactcgggg
atgtattctcccagccgttacccgccacagcagcagcagcagcagcaacgacatgattcc
tatggcaatcagttctccgctcaaggcaccccttccggcagccccttccccagccagcag
accacaatgtatcagcagcagcagcagaattacaagcggccgatggatggcacctatggc
cctcctgccaagcggcacgaaggggagatgtacagcgtgccgtacagtgcggggcagggg
cagccccagcagcagcagctgccccccgcccagcccccacctgccaaccagcagcaagct
gctcagcctccccctcagcaggacgtgtacaaccagtacggcaacgcctatcctgccact
gccgccgctgctactgagcgccgaccagcaggcggcccccagaaccagtttccattccag
tttggccgggaccgtgtctcagcaccccctggctccaatgcccagcagaacatgccacca
cagatgatgggcggccccatacaggcatcggctgaggttgcccagcaaggcaccatgtgg
caggggcgcaatgacatgacctacaactacgccaacaggcagagcacgggctcggccccg
caaggccccacctatcatggcgtgaaccgaacagatgaaatgctgcacacggatcagagg
gccaaccatgaaggcccgtggccttcccatggcacacgccagcccccctatggtccttct
gcccccgtgccccccatgacaaggccccctccagccaactaccagcccccaccaagcatg
cagaatcacattcctcaggtatccagccctgctcccctgccccggccaatggagaaccgc
acctctccgagcaagtctccattcctgcactctgggatgaagatgcagaaggcagggccc
ccagtacccgcctcgcacatagcgcctgctcctgtgcagccccctctgattcggcgggac
atcaccttcccacctggctctgttgaagccacacagcctgtgttgaagcagcggaggcgg
ctcacaatgaaagacattggaaccccggaggcatggcgggtaatgatgtccctcaagtct
gggctgctggcagagagcacgtgggcattagacaccattaacatcctgctgtacgatgac
aacagcatcatgactttcaacctcagtcagctcccagggttgctcgaactccttgtggaa
tatttccgacgttgcctgattgagatctttggcattttaaaggagtatgaggtgggtgac
ccaggacagagaacactattggaccctgggagattcagcaaagcgtctagtccagcccct
gtggaaggggaggaggaggaagaccttctaggtcccaaactagaggaggaagaagaggag
gaagtaattgaaaatgatgaggagatggccttttcgggcaaggacaaagcagcctcagag
aatagtgaggagaaactgattagtaagtttgacaagcttccagtaaagatcgtgcagaag
aatgacccgtttgtggtggactgctcagataagcttgggcgcgtgcaggagtttgacagc
ggcctgctgcactggcggattggtgggggcgacaccactgagcatatccagacccacttt
gagagcaagacagagctgctgccttcccggcctcatgtgccctgccccccagtccctcgg
aagtatgtcacagcagtagagggcacaccagggacagcagagcaggagggccccccgcct
gatggccctccagaaaaacggatcacggccactatggacgacatgttgtccacgaggtct
agcacactgaccgaggagggcgctaagagtgtagaggccaccaaggaaagcagcaagttc
ccattcggcatcagcccagcgcagagccatcggaacatcaagatcctagaggatgaaccc
cacagtaaagatgagaccccactgtgtacccttctggactggcaggattcccttgccaaa
cgctgcatctgtgtctccaacaccatccgaagcctgtcatttgtgccaggcaacgacttt
gagatgtccaaacacccggggctgctgctgatcctgggcaagctgatccttctgcaccac
aagcacccagaacggaagcaggcaccactaacttacgagaaggaggaggagcaggaccaa
ggggtgagctgcaacaaagtggagtggtggtgggactgcttggagatgcttcgggaaaac
accttggtcacgctcgccaacatctcggggcagctggacctctccccgtaccccgagagc
atttgcctgcctgtcctggacggactcctacactgggcagtctgcccttcagctgaggcc
caggaccccttctccaccctgggccccaacgccgtcctctccccacagagactggtcttg
gaaaccctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccacgccc
cccttcagccgcctggagaagttgtatagcaccatggtgcgcttcctcagtgaccgaaag
aacccagtgtgccgggagatggctgtagtactgctggccaacctggcacagggcgacagc
ctggcagcccgtgccatcgcagtacagaagggcagcatcggcaacctcctgggcttcctg
gaggacagccttgctgccacacagttccagcagagccaggccagcctgctccacatgcag
aacccgccctttgagccaaccagtgtggacatgatgcgacgggctgcccgtgcgctgctg
gccctggccaaggtggacgagaaccactcagagttcacgctgtatgagtcacggctgttg
gacatctcggtatcaccgctgatgaactcactggtttcacaagtcatttgtgatgtactg
tttttgattggccagtcatga
DBGET
integrated database retrieval system
