Bradyrhizobium diazoefficiens USDA 110: blr8022
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Entry
blr8022 CDS
T00109
Symbol
blr8022
Name
(GenBank) ORF_ID:blr8022; similar to DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bja
Bradyrhizobium diazoefficiens USDA 110
Pathway
bja03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
blr8022 (blr8022)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bja03400
]
blr8022 (blr8022)
Enzymes [BR:
bja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
blr8022 (blr8022)
DNA repair and recombination proteins [BR:
bja03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
blr8022 (blr8022)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAC53287
UniProt:
Q89BX6
LinkDB
All DBs
Position
8805728..8806648
Genome browser
AA seq
306 aa
AA seq
DB search
MAFHRRKPAAVGVKAPFPGFVEPALASSIEKVPSGARWIHEIKFDGYRVQVQLANEAVRV
FTRRGHDWTNRFKKVADDAWHIKAGSAIVDGEIVVPAADGTTDFSVLQNELKGKSTSIVL
VAFDLLYLNGRDLRKLPLFQRKTELKKIIDGTEIQFSESFELEGADIFAHACKIGLEGIV
SKVRDSAYASGRGNNWVKKTCAQRETLTIAGYALDEGKWDGIYLGRRKGDDLVYAGKVDH
GFDKVSAAELQKRLKPLIRKTQPYAKRIAHKGIWVEPKLLAEVEYRAKSAEGKVRHPFFK
GLREDL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtggcgtttcatcgacgtaaaccggcggcggtcggcgtgaaggcgccgttccccggcttc
gtagaaccggccttggcatcatcgatcgagaaggtgccgtccggggcgcgatggattcac
gaaatcaagttcgatggctaccgggtccaggtccagctggcgaacgaagccgtgagggta
ttcacccgccgcggccacgactggaccaaccgcttcaagaaggtcgccgacgacgcctgg
cacatcaaggcggggtcggcgatcgtggacggtgaaatcgtggtccccgccgcggacggc
acgacggacttctcggtccttcagaacgaactgaaaggcaagtcgaccagcatcgtactg
gtcgccttcgatctcctgtacctgaacggccgcgacctccggaagctgccgctcttccag
cgcaagaccgaactcaagaagatcatcgacggcaccgagatccagttcagcgaaagcttc
gagcttgaaggtgccgacatattcgcacacgcctgcaagatcgggctcgagggcatcgtt
tcgaaggtacgcgacagcgcatacgccagcggccgcggcaacaactgggtgaagaagacc
tgcgcgcagcgggagaccctgacgattgccggctacgcgctcgacgaggggaaatgggac
ggcatatacctcggacggcgaaagggcgacgacctcgtctacgcaggcaaggtcgaccac
ggcttcgacaaggtttcggctgccgagttgcagaagcgtctgaagccgctgatccggaag
acccaaccctacgcgaagcggatcgcacacaagggcatctgggtcgagccgaagctgttg
gccgaggtcgaatacagggccaagtccgccgaaggaaaggtccggcatccgttcttcaag
ggactgcgagaagatctttga
DBGET
integrated database retrieval system
