Bradyrhizobium japonicum USDA 6: BJ6T_42920
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Entry
BJ6T_42920 CDS
T01848
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bju
Bradyrhizobium japonicum USDA 6
Pathway
bju03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJ6T_42920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bju03400
]
BJ6T_42920
Enzymes [BR:
bju01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJ6T_42920
DNA repair and recombination proteins [BR:
bju03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJ6T_42920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Mit_proteolip
Motif
Other DBs
NCBI-ProteinID:
BAL09565
LinkDB
All DBs
Position
complement(4399683..4400603)
Genome browser
AA seq
306 aa
AA seq
DB search
MAFQRKKPEALGVKAPFPGFIEPALASSIDRVPSGERWIHEIKFDGYRVQVHLANEAVTV
FTRRGHDWTKRFKKVADDAWHIKASSAIIDGEAVVPAAGGSTDFSVLQNELKGTSTKIVL
VAFDLLYLNGRDLRKVPLLQRKAALKKIIAGSDVQFSESFEIDGREMFMHACKVGLEGVV
SKVRDSIYASGRGNNWVKKTCAQRETLTIAGFALDDGKWDGIYLARRRGDDLIYAGKVDH
GFDKVSAAALQKRLKPLIRPTQPYAKRIAHRGIWVEPKLLAEIEYRAKSAEGKVRHPFFK
GLREDL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtggccttccagcgaaaaaagccagaagcgctaggcgtcaaggcacccttccccggcttc
atcgagccggccctggcatcctcgatcgaccgcgtgccatccggcgagcgctggattcat
gagatcaagttcgacggatatcgcgtccaagtgcatctcgccaacgaagctgtcaccgtt
ttcacccgccgcgggcacgactggaccaaacgctttaagaaggtcgccgacgacgcatgg
cacattaaggcgagctcggcgatcatcgacggcgaggccgtggtgccggccgccggcggc
agcaccgatttctccgtcttgcagaacgagctaaagggcacctcgactaagatcgtgctc
gtcgccttcgacctgctgtatctcaacggccgggatctacggaaagtccccctgctccag
cgcaaggccgcgctgaagaagatcatagccggcagcgacgtccaatttagcgaaagcttc
gagatcgacggccgcgagatgttcatgcacgcctgcaaggtcgggctcgaaggcgtggtc
tcgaaggtgcgtgacagcatctacgcgagcggccggggcaacaactgggtcaagaagacc
tgcgcccaacgcgagacgctgacgattgccggcttcgcgctcgatgatggcaaatgggac
ggcatttatctcgcgcggcgcaggggcgacgacctgatctatgccggcaaggtcgaccac
ggcttcgacaaggtctcggccgctgcactccaaaagcgcctgaagccgttgatccgaccg
acgcagccctacgccaagcgcatcgcgcacaggggcatctgggtcgaaccgaagctgctc
gccgagatcgagtaccgggccaagtcggccgaaggaaaagtgcgacatccgttctttaag
gggttgcgtgaggacctataa
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integrated database retrieval system
