Halalkalibacter krulwichiae: BkAM31D_15790
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Entry
BkAM31D_15790 CDS
T04947
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bkw
Halalkalibacter krulwichiae
Pathway
bkw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bkw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BkAM31D_15790 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bkw03400
]
BkAM31D_15790 (ykoU)
Enzymes [BR:
bkw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BkAM31D_15790 (ykoU)
DNA repair and recombination proteins [BR:
bkw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BkAM31D_15790 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ARK31199
UniProt:
A0A1X9MCN1
LinkDB
All DBs
Position
2866762..2868411
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AA seq
549 aa
AA seq
DB search
MKPMLLSPAIDLPPEEGWLFETKYDGFRCLLVWEQKTPQLLSRNEKILNKQFPEIISFCE
TIYPTIKSLLPIVLDGELVYLLNNHHSDFKQVQLRGRMKTISVISKHAASFPCHLVVFDL
LKKEGTSLSNEHLLIRKKELKTLFNSLHLPVTLNYGNNARLQMIVSENNSKKLWEKVQSY
NGEGVIAKRETSIWEGGRRTNNWLKIKNYRYVSVCLTKYDQKNGYFHGSIFKIDQLVDVV
IFKHGLSKEEEKTLQNFFKTNGEKGSDTTWELEPSICVKVACIDFDGKQLREPHFHTFNF
EIEPSECTWEAMLRQLHPLPQSIAVTNPEKPIWPKHSINKDDYLLYLQKVSPYLLPFLKE
RLLTVIRYPHGATDEHFYQKHRPDYAPSFIDTELVEDINYIVCNKIDTLLWLGNQLALEF
HIPFQTRTTANPTEIVFDLDPPSVNEFSLAIEAALQMKAIFDQFNLVSFVKTSGGKGLQL
YIPLPENQFSYQETRLFTQFVCDFLCEQQPNWFTTERLKKNRGNKLYLDYIQHDEGKTII
APYSPAEVI
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacctatgctgttatcacctgcaatcgatttaccacctgaagaaggatggttattc
gaaacaaaatacgatggatttcgatgtctattagtctgggaacagaaaaccccacaactt
ttaagtcgaaatgaaaagatattaaacaagcaatttcctgaaattattagcttttgtgaa
accatttatcctacgatcaaatccttacttcctattgttcttgatggtgaactagtctac
ttattaaataatcatcatagtgatttcaaacaagttcaacttagaggacggatgaaaaca
atttctgtcattagcaaacatgctgcaagtttcccgtgccaccttgtagttttcgactta
ctaaaaaaagaaggaacctcgctatctaatgagcacctactaattaggaaaaaagaatta
aaaacgctatttaactctttacatttacccgttacattgaattatggaaataatgcaaga
ttacaaatgatcgtaagtgaaaacaatagcaaaaagttatgggaaaaggttcaatcatat
aatggtgaaggagtgatcgctaaaagagaaacaagcatttgggaaggaggcagacgaaca
aataactggctaaaaatcaagaattatcgatatgtttctgtttgcttaacaaagtatgat
cagaaaaatggttattttcacggctccatttttaaaattgatcaattagtggatgtagtt
atttttaaacacggactctctaaagaggaagaaaaaaccttgcaaaactttttcaaaaca
aatggtgagaaaggatctgacacaacatgggagttagaaccatctatttgtgtgaaagtc
gcgtgtatagattttgatggaaaacaactcagggaaccacattttcatacattcaatttt
gaaatagaaccaagtgaatgtacatgggaagcaatgttacgacaacttcacccattacca
caatcgatcgccgttacaaatcccgaaaagccaatttggccaaaacattctataaataaa
gatgattacttgctctatttgcaaaaggtctccccttatctcttaccctttttaaaagaa
agattactaactgtgattcgttatccacacggcgcaacagatgaacatttttatcaaaag
catcgtcctgactacgcaccttcttttatagacaccgaacttgttgaagacattaattac
atcgtctgtaataaaatagacacacttctctggttaggaaatcaattagcattagagttt
catataccatttcaaacaagaaccactgctaacccaacagaaattgtctttgatttagat
ccaccttctgtgaatgagttttcattagcaattgaagcagccttacaaatgaaagctatt
tttgatcaatttaaccttgtgtcatttgtaaaaacatctggtgggaagggattgcaacta
tatattcccttgccagaaaatcagttcagttatcaagaaacccgtttatttacacaattt
gtttgtgactttttatgcgaacaacaacctaattggtttacgaccgaacgactaaaaaaa
aatagagggaataaattataccttgattatattcagcatgatgaaggaaagacaatcata
gcaccgtattcccccgcggaagtgatttag
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