Blastomonas sp. RAC04: BSY18_564
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Entry
BSY18_564 CDS
T04450
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
blas
Blastomonas sp. RAC04
Pathway
blas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
blas00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BSY18_564 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blas03021
]
BSY18_564 (rpoD)
Transcription machinery [BR:
blas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BSY18_564 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
TniQ
EspA_EspE
DUF4168
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
AOF99955
UniProt:
A0A1B3N3N3
LinkDB
All DBs
Position
complement(545828..547840)
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AA seq
670 aa
AA seq
DB search
MASKAPKDSKADTTDAPLIDLNEASVKKLLSRAKKRGYITYDELNEALPQDQMSSEQIED
VMSAISEMGVNIVENDEEAGEEQPADDNDTPDDGSEQLNISPEKKKETMDRTDDPVRMYL
REMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFHAIIEWSTALNDGEMQLREIL
DLDAMLSKEPAPESLSEDGEDDGEISEKTAGPSFKEEDDVEEVAETNDDEDDLTERRTRR
PDDDEEEDNTLSLAQMEAQLKPAALEKFALITSLFRKFEKIQRDRLNALSIGDDFPSAKE
KSYQKLREDLTAEVESVQFHANKIEYLVDQLYAFNRRLTALGGQMLRLAERHKVPRKDFL
DRYLGHEMDEAWLETMAGVDKKWAAFVSNEAGAVDRIRAEISDIAAATGMSLNEFRRIVN
MVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEM
AERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKET
VTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSR
SRKMRSFLDQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
ttggcaagcaaggcaccgaaagacagcaaggccgacaccacggatgcaccgctgatcgat
ctgaacgaagcctcggtcaagaagctgctctcgcgcgccaagaagcgcggctacatcacc
tatgacgagctgaacgaggcgctgccgcaggaccagatgtcgtccgagcagatcgaggac
gtgatgtccgcgatctcggagatgggcgtcaacatcgtcgagaacgacgaggaagcgggc
gaagaacagccggcggacgataacgacacccccgacgacggttcggaacagctcaacatc
tctccggaaaagaagaaggagacgatggaccgcaccgatgatccggtgcgcatgtacctg
cgcgaaatgggcgcggtggagctgctcagccgcgagggcgaaatcgccatcgccaagcgc
atcgaggccggccgcgacacgatgatcctggggctgtgcgaaagcccgattaccttccac
gccatcatcgaatggtcgaccgcgctcaacgacggcgaaatgcagctgcgcgagatcctc
gatctcgacgcgatgctgtcgaaggagcccgcgcccgaaagcctgtccgaggacggcgag
gacgatggcgagatcagcgagaagaccgcgggccccagcttcaaggaagaggacgatgtc
gaggaggtcgccgagaccaacgacgacgaagacgatctgaccgagcgccgcacccgccgt
cccgatgacgacgaggaagaggacaacacgctcagcctcgcgcagatggaagcgcagctg
aagcccgccgcgctcgagaagttcgcgctgatcacctcgctgttccgcaagttcgagaaa
atccagcgcgatcgcctcaacgcgctcagcatcggcgacgatttcccgtcggccaaggaa
aagagctatcagaagctgcgcgaggacctgaccgccgaggttgagtcggtgcagttccat
gccaacaagatcgaatatctggttgaccagctctatgccttcaaccgccgcctgaccgca
ttgggcggccagatgctgcgccttgccgagcgccacaaggtgccgcgcaaggacttcctc
gaccgctatctcggccacgagatggacgaggcgtggctggaaaccatggcgggcgtcgac
aagaaatgggcggccttcgtcagcaacgaagcaggcgcggttgaccgcatccgcgcggaa
atcagcgacatcgctgccgccaccggcatgagcctcaacgagttccgccgcatcgtcaac
atggtgcagaagggcgagcgcgaggcgcggatcgccaagaaggaaatggtcgaggcgaac
ctgcgtctcgtgatctcgatcgccaagaaatacaccaaccgcggcctgcagttcctcgac
ctcatccaggaaggcaatatcggcctgatgaaggcggtggacaagttcgagtatcgccgc
ggctacaagttctcgacctatgccacatggtggatccgtcaggcgatcacccgttcgatc
gcggatcaggcgcgcaccatccgcatccccgtgcacatgatcgagacgatcaacaagctg
gtgcgcaccagccgccagttcctgcacgagcagggccgcgaacccacgcctgaagaaatg
gccgagcgcctctctatgccgctcgaaaaggtccgcaaggtgatgaagatcgccaaggag
ccgatctccctcgaaacgccgatcggtgatgaggaagacagccacctgggcgatttcatc
gaggacaagaatgcgatcatcccggtggatgccgcgatccaggcgaacctcaaggaaacc
gtcacgcgggttcttgcgagcctgaccccgcgcgaggaacgcgtgctgcgcatgcgcttc
ggcatcggcatgaacaccgatcacacgcttgaagaggtcggccagcagttctcggtcacc
cgcgaacgtatccgtcagatcgaggcgaaggcgctgcgcaagctgaagcacccgagccgt
tcgcggaagatgcggtcgttcctggatcagtaa
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integrated database retrieval system
