Bacillus licheniformis DSM 13 = ATCC 14580: BLi01494
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Entry
BLi01494 CDS
T00200
Symbol
ykoU
Name
(GenBank) ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bld
Bacillus licheniformis DSM 13 = ATCC 14580
Pathway
bld03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BLi01494 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bld03400
]
BLi01494 (ykoU)
Enzymes [BR:
bld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BLi01494 (ykoU)
DNA repair and recombination proteins [BR:
bld03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BLi01494 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AAU40395
LinkDB
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Position
complement(1465910..1467760)
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AA seq
616 aa
AA seq
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MGITMQPVLTTSAPSGGNWRYEVKYDGYRGLLKIAATGEVSLISRNSQPLENTFPEISEF
AKSMIETLKEHLPITIDGEIVSLTNRFRSRFEYVQKRGLSKKAELIAQAAAKKPCQYLAF
DLLVFNGESLTSLPYTERKRMLFDLMKELGLPMAPDPMAHARIQYIPDTSDFHDLWKAVK
RFDGEGIVAKKKDSRWAENKKTAEWLKLKNYKKAAVFMTGYNMANRYLTIAVYDRGQIKE
VGSVSHGLGEQERNAILSIVKQYGTETKPGEYTIDPSICMTVHYLTIHYGTLREVSFVSF
EFDMAWENCTYNRLLLHSRNVHPDLQLTSLDKVIFPKSDKTKADYIGYLNEIGDFLLPFL
DNRALTVIRYPHGSGGESFFQKNKPDYAPEFITSIRDDEHEHIICSDYSVLLWLANQLAL
EFHIPFQTVDTAHPTEIVFDLDPPSKSEFPLAVRAAKELHRLFDQLGLLSFPKLSGNKGI
QIYIPISKNAFTYEETRLFTSFAASYCVSLFPDLFTTERLIKNRGGKLYIDYVQHAPGKT
IICPYSTRGNELGTVAAPLFWDEVHSDLSPLNFTMEAVVKRTKELGCPFESFFRQPQDKQ
IKAILDHLKENNRSEN
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgggaattacgatgcagcctgtattgactacatcagctccctcaggcggcaattggcgg
tatgaagtcaaatatgacgggtatcggggtcttttaaagattgctgcgaccggcgaagtt
tcgctcatcagcagaaactcacagccgctcgaaaacacatttccggaaatttcggaattt
gcaaaaagcatgatcgaaactctcaaagaacacttgccgatcacgattgacggggaaatt
gtgtcgttgacaaaccgttttcgttcccgatttgaatatgtccaaaaaaggggtttgagc
aaaaaggccgagttgattgcacaagcagccgcaaagaaaccgtgccagtacttggctttt
gatttactggtttttaacggagaaagtttaacctcgctcccctataccgaacgaaaacgc
atgcttttcgacctgatgaaagagctcggcctgccgatggctcccgatccgatggctcac
gctcgaattcaatacatccctgacacttctgatttccacgacctttggaaggctgttaaa
aggtttgacggcgagggaattgtcgcgaagaaaaaagacagccgctgggctgaaaataaa
aaaacggccgaatggctcaaactcaaaaactacaaaaaagctgctgtatttatgacaggc
tacaacatggcaaaccgttatttgacaatcgccgtctatgaccgcggccaaatcaaggaa
gtcggttcggtttcccacggactcggagaacaggaaagaaacgccattctttcgatcgtc
aagcaatacggaaccgaaacaaaacccggtgaatataccattgatccgtcgatttgcatg
acggtccattacttaacgattcattacgggacattgcgcgaggtgtcgtttgtttcattt
gaatttgacatggcatgggaaaattgcacttacaaccgcctgctgcttcattcaagaaac
gtccatcccgatttgcagctgacaagccttgataaagtcatctttcctaaaagcgataaa
acaaaagcggattacatcggataccttaatgaaatcggcgattttctgcttccgtttctc
gacaatcgggcgcttaccgttatccgttatccgcacggttccggcggagagtcttttttt
caaaaaaacaagcccgactacgcacccgaatttatcacgtccattcgggatgacgagcac
gagcatatcatctgcagcgattattcggttctgctgtggcttgccaatcagcttgcgttg
gagttccatatcccttttcaaacggtggatacggcccatccgaccgaaatcgttttcgat
cttgatccgccttcaaagtcggagtttccgctggccgtcagagccgcgaaagagctgcac
cgtttatttgatcagctcggcctcttatcttttccaaagctgtcgggaaataaagggata
caaatctatattccgatttcaaaaaacgcctttacttatgaagaaacccgccttttcaca
agctttgcggcttcttattgcgtctcgctttttcccgatctgttcacaaccgaacgcctg
atcaaaaacaggggcggaaagctctatattgactatgtgcagcatgccccgggaaaaacg
atcatctgcccgtattccacaagaggcaatgagcttggcacagtggccgcaccgctgttt
tgggatgaagtccattcagacttgtcacccttaaattttacgatggaggctgtcgtcaaa
cgcacaaaggaactcggatgccctttcgaaagcttcttcagacagccccaggacaaacag
atcaaagctattctcgatcacttaaaagaaaacaaccgttcggaaaactga
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