Bacillus licheniformis ATCC 14580: BL03626
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Entry
BL03626 CDS
T00197
Symbol
ykoU
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bli
Bacillus licheniformis ATCC 14580
Pathway
bli03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BL03626 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bli03400
]
BL03626 (ykoU)
Enzymes [BR:
bli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BL03626 (ykoU)
DNA repair and recombination proteins [BR:
bli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BL03626 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AAU23040
UniProt:
Q65KL9
LinkDB
All DBs
Position
complement(1466059..1467909)
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AA seq
616 aa
AA seq
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MGITMQPVLTTSAPSGGNWRYEVKYDGYRGLLKIAATGEVSLISRNSQPLENTFPEISEF
AKSMIETLKEHLPITIDGEIVSLTNRFRSRFEYVQKRGLSKKAELIAQAAAKKPCQYLAF
DLLVFNGESLTSLPYTERKRMLFDLMKELGLPMAPDPMAHARIQYIPDTSDFHDLWKAVK
RFDGEGIVAKKKDSRWAENKKTAEWLKLKNYKKAAVFMTGYNMANRYLTIAVYDRGQIKE
VGSVSHGLGEQERNAILSIVKQYGTETKPGEYTIDPSICMTVHYLTIHYGTLREVSFVSF
EFDMAWENCTYNRLLLHSRNVHPDLQLTSLDKVIFPKSDKTKADYIGYLNEIGDFLLPFL
DNRALTVIRYPHGSGGESFFQKNKPDYAPEFITSIRDDEHEHIICSDYSVLLWLANQLAL
EFHIPFQTVDTAHPTEIVFDLDPPSKSEFPLAVRAAKELHRLFDQLGLLSFPKLSGNKGI
QIYIPISKNAFTYEETRLFTSFAASYCVSLFPDLFTTERLIKNRGGKLYIDYVQHAPGKT
IICPYSTRGNELGTVAAPLFWDEVHSDLSPLNFTMEAVVKRTKELGCPFESFFRQPQDKQ
IKAILDHLKENNRSEN
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgggaattacgatgcagcctgtattgactacatcagctccctcaggcggcaattggcgg
tatgaagtcaaatatgacgggtatcggggtcttttaaagattgctgcgaccggcgaagtt
tcgctcatcagcagaaactcacagccgctcgaaaacacatttccggaaatttcggaattt
gcaaaaagcatgatcgaaactctcaaagaacacttgccgatcacgattgacggggaaatt
gtgtcgttgacaaaccgttttcgttcccgatttgaatatgtccaaaaaaggggtttgagc
aaaaaggccgagttgattgcacaagcagccgcaaagaaaccgtgccagtacttggctttt
gatttactggtttttaacggagaaagtttaacctcgctcccctataccgaacgaaaacgc
atgcttttcgacctgatgaaagagctcggcctgccgatggctcccgatccgatggctcac
gctcgaattcaatacatccctgacacttctgatttccacgacctttggaaggctgttaaa
aggtttgacggcgagggaattgtcgcgaagaaaaaagacagccgctgggctgaaaataaa
aaaacggccgaatggctcaaactcaaaaactacaaaaaagctgctgtatttatgacaggc
tacaacatggcaaaccgttatttgacaatcgccgtctatgaccgcggccaaatcaaggaa
gtcggttcggtttcccacggactcggagaacaggaaagaaacgccattctttcgatcgtc
aagcaatacggaaccgaaacaaaacccggtgaatataccattgatccgtcgatttgcatg
acggtccattacttaacgattcattacgggacattgcgcgaggtgtcgtttgtttcattt
gaatttgacatggcatgggaaaattgcacttacaaccgcctgctgcttcattcaagaaac
gtccatcccgatttgcagctgacaagccttgataaagtcatctttcctaaaagcgataaa
acaaaagcggattacatcggataccttaatgaaatcggcgattttctgcttccgtttctc
gacaatcgggcgcttaccgttatccgttatccgcacggttccggcggagagtcttttttt
caaaaaaacaagcccgactacgcacccgaatttatcacgtccattcgggatgacgagcac
gagcatatcatctgcagcgattattcggttctgctgtggcttgccaatcagcttgcgttg
gagttccatatcccttttcaaacggtggatacggcccatccgaccgaaatcgttttcgat
cttgatccgccttcaaagtcggagtttccgctggccgtcagagccgcgaaagagctgcac
cgtttatttgatcagctcggcctcttatcttttccaaagctgtcgggaaataaagggata
caaatctatattccgatttcaaaaaacgcctttacttatgaagaaacccgccttttcaca
agctttgcggcttcttattgcgtctcgctttttcccgatctgttcacaaccgaacgcctg
atcaaaaacaggggcggaaagctctatattgactatgtgcagcatgccccgggaaaaacg
atcatctgcccgtattccacaagaggcaatgagcttggcacagtggccgcaccgctgttt
tgggatgaagtccattcagacttgtcacccttaaattttacgatggaggctgtcgtcaaa
cgcacaaaggaactcggatgccctttcgaaagcttcttcagacagccccaggacaaacag
atcaaagctattctcgatcacttaaaagaaaacaaccgttcggaaaactga
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