Bifidobacterium longum subsp. longum JDM301: BLJ_1339
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Entry
BLJ_1339 CDS
T01240
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bll
Bifidobacterium longum subsp. longum JDM301
Pathway
bll03030
DNA replication
bll03430
Mismatch repair
bll03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BLJ_1339 (dnaE)
03430 Mismatch repair
BLJ_1339 (dnaE)
03440 Homologous recombination
BLJ_1339 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bll03032
]
BLJ_1339 (dnaE)
03400 DNA repair and recombination proteins [BR:
bll03400
]
BLJ_1339 (dnaE)
Enzymes [BR:
bll01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BLJ_1339 (dnaE)
DNA replication proteins [BR:
bll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BLJ_1339 (dnaE)
DNA repair and recombination proteins [BR:
bll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BLJ_1339 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
DUF655
DUF5487
Motif
Other DBs
NCBI-ProteinID:
ADH00785
UniProt:
D6ZV79
LinkDB
All DBs
Position
complement(1582911..1586468)
Genome browser
AA seq
1185 aa
AA seq
DB search
MADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCV
ANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNL
IKASSVANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGE
FQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAM
LCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHED
GAFMPKFPCPEGWDETSLFLKKVEEGLEKRYDGNPPLDVLKQADYECGVICQMQFCGYFL
VVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLPDI
DVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVTKA
LPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTGVH
ACATIMGSAPITDTSPLLERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTLKNI
EANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISALIA
LYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAARIL
AGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGYAFN
KAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPDVN
ESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALNRR
LVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEAMGD
ASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKTMGE
GQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYEAAAAELAVDAIVQI
RGQVELRDETVSLRATEMQIPTLEAEDERPLVITLPPVALERQRMMQLGQVLANHPGYCE
VHLAVLDEKGNAQVLTFGDRFRVKRDTSLFAEIKILFGPSCLPAA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggctgattacgggaacaactttgtgcaactgcataaccacacgcactattcgctgctc
gatggtgcgtcgaagatccctgatttggccaagcgtgcggccgaacttggcatgcctgcg
gtcggcatcaccgaccatggcaacatgcatggcgcctacgagatgtacaccaactgcgtg
gccaatggcgtcaagcccatcatcggcatcgaagcttatgtgaccccggaaaccgcacgt
caagacaaatcccgcgtgcattggggcactgaagcccagcgccgtgacgacgtctccggt
ggtggtcttatcacccacttgaccatgtgggctgaaaacgacgaaggcctggtcaacctc
atcaaagcttcgtccgtggccaacctcgaaggtcgcgtcatgcgttatccgcgtatggat
aaggaggtgctcgccacctattccaaaggcgtgatcgcatcctccggctgcccctcgggc
atcatccagacccgtctgcgtctcggtcagttcgatgaggccctgcgcgccgccggcgaa
ttccaggacatcttcggcaaagacaacttcttcatcgaactcatggatcacggtctgccc
atcgaaactcaggtgaccggtgacctgctgaccatagccaagaaactcaacgcaccactg
ctggccaccaacgattcccactacgtacacgccgaagatgcccaggcacaggacgccatg
ctctgcatcaactccggttcccgtcttgacgatccggaccgattcaaattcgacggcacc
ggctactacatcaaaaccgccgaagagatgcgcgaactgttcaaggaccatccggacgcc
tgcgacaacaccctcgccatcgccgaacgctgcaacgtgatgttcgacgaccacgaagac
ggcgcgttcatgccgaaattcccctgccccgaaggctgggatgagacctccctgttcctt
aaaaaagtcgaggaaggtctggagaagcgttacgacggcaacccgccgctcgacgtattg
aagcaggccgactacgaatgtggtgtgatctgccagatgcagttctgcggatacttcctc
gtggtcgccgactacattcagtgggccaaggaccacggcattatggtgggtccgggccgt
ggctcggccgcaggcgccatggtcgcctattccatgggcattaccgagctcgatccgctc
aagcatggcctgattttcgagaggttcctgaaccctgagcgagtgagccttcctgatatc
gatgtcgacttcgaccctgaaggtcgtgcgcgagtcatcgaatactgcggcgaaaaatac
ggcaccgataaggtcgcccagtgcgtgatctatggcaccatcaaaaccaagcaggccttg
aaggactccgcccgcatcatgggctacgagttctcggtcggtgaaaaagtcaccaaggcg
ctgcctcccgcggccaccggcggcaaggatatcagcctgcatgacatcttcgacccgaca
gccaaacgctacgccgaggccagggaattccgagaactctacgattccgacccggacgcc
aagcgcatcaccgaagaagccaagggtatcgaaggcctgatccgacagaccggtgtacat
gcctgcgccaccatcatgggtagcgcgcccatcaccgacacctcgccgttgctggaacgc
accgatggcaccatcaccaccaccttcgaataccacacgtgcgaaacgttggggttggtc
aagatggacttccttggcctgtccaacttgacgatcatccacgacaccctgaagaacatc
gaggccaacggcaaacccgccatcgactacaccaagattccgctcgatgacgccgaaacc
tacaaactcatgtcccgaggagacacgctcggcgtgttccagctcgattccgacggcatg
cgttcactgctgaaaaccctgaagcccgataacttcaacgatatttccgcacttatcgct
ctgtaccgaccgggcccgatgagtatggattcgcacaccaactacgccaagcgcaagaat
ggcctgcagaagatcacgccaatccaccctgagcttgaggaacctctgaagcaggtgctt
gacgagacctatggtctgatcatctaccaggagcaggtgcagtccgccgcccgaatcctc
gccggctattcgctgggcaaggcagacgtgctgcgtcgagccatgggtaagaagaagccc
gaagtgctggccaaggagaaggtgccgttcttcgccggtatgaaggagcatggatactcc
gaagaggcctcccaggccgtgtgggatattctggtgccgttctccggctacgctttcaac
aaagcgcactccgccgcatacggtctgatctcctactggaccgcatatctgaagacgcac
tacccggtcgaattcatggccgccctgttgcaaggtgccgccaccaacaaagacaagacc
gcactgtacttgggcgaggcccgccgcatgggcatccaggtgctctcgccggacgtcaac
gaatcggtgtacgagtactcggcagtcggcgacgtcgtccgattcggtcttggtgccatc
cgtaacgtgggtgacaaggccgtggccgatatcatcgccgaacgcgaaggcccgcgcggc
aagttcgtgaacttcatggacttcatccgccgcgtgcccctgaccgcgctgaaccggcga
ttggtcgaatcgttgatcaaggccggtgccttcgactcgattgacccgaaccgtcgcgcg
ctgttcaccgtgcacgaggccgccatcgactcggtggtgagtctgaagcgcaaacaggcg
gagggccagttcgatttgttctccgatgccgaggatgggggagcggaggccatgggcgac
gcttccgtgaccgtacccgatcttgaggaatgggacaagaagaccaagcttaacttcgaa
cgcgaaatgttgggcctgtatgtgtctgaccatccgctctccggtatgcagtcgattctc
gcgtccttgcgtgaaatgtccatcgcgcatctggttgatcgagccaaaacgatgggtgaa
ggacagcaggtcacgttggctggtttggtcaccaatgtggaccggcgcgtatccaagaag
ggcaacccctgggccatcgtgaccatcgaagacatggaaagctccatccaatgtatgttc
ttcggcaaggtctatgaagcggccgccgccgaactcgccgtggacgccatcgtacagatt
cgtggccaagtggagttgcgcgacgaaaccgtttctctgagagccacggaaatgcagatt
ccgaccttggaagccgaggatgaacgtccgttggtcatcacgctgccgccggtggcgttg
gagcgccaacgcatgatgcaactcggtcaggtgctcgctaatcatcctggttactgcgaa
gtacatcttgcggtgctggatgagaagggtaacgctcaggtgctcacgtttggcgatcgt
ttccgcgtcaagcgggatacttcgttgtttgctgagatcaagattctgtttggccccagc
tgcttgcctgccgcctga
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