Brevibacillus laterosporus: BRLA_c033620
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Entry
BRLA_c033620 CDS
T03762
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
blr
Brevibacillus laterosporus
Pathway
blr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
blr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BRLA_c033620 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blr03400
]
BRLA_c033620 (ykoU)
Enzymes [BR:
blr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BRLA_c033620 (ykoU)
DNA repair and recombination proteins [BR:
blr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BRLA_c033620 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AIG27674
UniProt:
A0A075R759
LinkDB
All DBs
Position
3718558..3719454
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AA seq
298 aa
AA seq
DB search
MAIATKEYRLEIEGKELVITNPDKPLWPKASVTKLIYLQYLIQMAPYILPYTTDRFLTVI
RYPHGVEDKSFYQKNLPDYAPEWIPRAVDGSITYALLNDTATLIWMANQAVLEWHIAFHT
YQEEWPTELVFDLDPSTPDFRDAIEASLYLKEILDELQLNSYPKTSGASGIQVYIPIQPG
YAFEQTRKVGEFICNYLTQKYPKTLTIERLTKNRGTKLYLDYLQHWRGKTLPAPYTTRAK
ELATVSAPLSWSEIESVHPSDFTIHTMPERVKQKGDLFLPLQQQENRSTLDHILDILS
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgctacgaaagagtatcgtttagagatcgaaggaaaagaactagttatcacc
aatcccgataagcctctttggcctaaagccagcgtaaccaaactcatctatttacaatat
ctcatacaaatggctccttatatactcccttatacaactgatcgatttttaactgtgatt
cgctatccgcatggagtcgaggataaatcgttttaccaaaaaaatcttccagattatgcg
ccagagtggattccacgtgctgtagatggctctatcacctatgcattgttaaatgatact
gccacactgatctggatggccaatcaggctgtattagaatggcacattgcttttcatacc
tatcaagaggaatggcctactgagttggtttttgatcttgatccatccactcccgatttt
agagatgcaatagaagctagtttgtatctaaaagagattctggatgagctacagctcaac
agctatcccaaaacatcgggggccagtggtatccaagtttatattcctattcagccaggc
tatgctttcgaacaaactcgaaaggtaggagaatttatttgtaactatctgacgcaaaaa
tatccgaaaacattaaccatcgaacgtttgacgaagaatcgaggaacgaagttatatctc
gattacttacagcattggcgcggcaaaacattacccgctccctacacaaccagagccaag
gaactagcaacagtctccgcccctctaagctggtcggaaatagagagtgtacatcctagt
gattttactatccacacaatgcctgaacgggtcaaacaaaaaggagacttatttcttcct
ttacaacagcaagaaaatcgatctactctagaccatattttagatatattaagctaa
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