Bifidobacterium animalis subsp. lactis B420: W7Y_1333
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Entry
W7Y_1333 CDS
T02079
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
blw
Bifidobacterium animalis subsp. lactis B420
Pathway
blw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W7Y_1333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blw03019
]
W7Y_1333
Messenger RNA biogenesis [BR:
blw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
W7Y_1333
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GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
SSL_N
Motif
Other DBs
NCBI-ProteinID:
AFJ17046
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Position
complement(1539464..1541209)
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AA seq
581 aa
AA seq
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MNKPLATSDTQDENRVAPPKYRKGSMRIVPLGGLGEIGRNMNVIEYNGHILLIDCGVLFP
EEEQPGVDLILPDFNYIKDRLDKVDALVLTHGHEDHIGGVPYLLKMRPDIPLIGSKLTLG
FVEAKCREHRIEPVMTQVEGRDKLKVGPFNLEFVSVTHSIPDALAVCVRTPAGSLIDTGD
IKLDQLPLDHRVTDLVEFGKLGEQGIDLLMMDSTNAEVPGFVKPETSIGPALDQVFATAT
RKIIVASFSSHVHRVQQVVDAAHKYGRKVVFVGRSMVRNMAIAADLGYLHLPEDTVIDVK
KAKDYPDNKLVYMCTGSQGEPMAALGRIADGNHRDITINEFDTVILASSLIPGNEHGVYK
VINKLVQLGARVVNRDNAAVHVSGHCNEGELLYMYNIVKPRNAMPIHGENRHLVANGLIA
VKTGIEPENVVLAEDGDVVDLYHGKAAIVGSVPCGYIYVDGDSVGELTDEELEKRRILGT
EGFVSCFAVVDTDAAEVVSGPKVYLNAVAEDESEFEKVRHQIVEQLRDAMMTGTKDTHKL
QQIMRRTLGGWVSRELKRKPMIVPVVADVAADMNKMESYND
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagccgctcgccacgagcgacacgcaggacgagaaccgcgtcgcaccgccgaag
taccgcaagggctcgatgcgcatcgtgccgctcggcggtctgggtgagatcggccgcaac
atgaatgtgatcgaatacaacggccacattttgctcatcgactgcggtgtgctgttcccg
gaagaggagcagccgggcgtcgacctcattctgcctgacttcaactacatcaaggaccgt
ctcgataaggtggatgcgctggtgctcacgcacggccatgaagaccacatcggcggcgtg
ccgtatctgctcaagatgcgtccggacattccgctcatcggttcgaagctcacgctcgga
ttcgtggaggcgaagtgcagggaacaccgcatcgagccggtgatgacgcaggtcgaaggc
cgtgacaagctcaaggtgggtccgttcaacctcgaattcgtctcggtgacgcattcgatt
ccggacgcgctcgccgtgtgcgtgcgcacgccggccggctcgctcatcgacaccggtgac
atcaaactcgaccagctgccgctcgaccaccgcgtcaccgatctcgtggagttcggcaag
ctcggcgaacagggcatcgacctgctgatgatggattcgacgaacgccgaggttcccggg
ttcgtgaagccggagacctcgatcggcccggcactcgaccaggtgttcgccaccgcgacg
cgcaagatcatcgtcgccagcttctcgagccacgtgcaccgcgtgcagcaggtggtggac
gccgcccacaagtatggccgcaaagtcgtgttcgtcggccgttcgatggtgcgcaacatg
gccatcgccgccgatctgggctacctgcacctgcctgaggacacggtgatcgacgtcaag
aaagccaaggactaccccgacaacaagctcgtgtacatgtgcacgggttcgcagggtgag
ccgatggccgcgctcggccgcatcgccgacggcaaccaccgcgacatcacgatcaacgag
ttcgacacggtgattctcgccagctcgctcatcccgggcaatgaacacggcgtgtacaag
gtgatcaacaagctcgtacagctcggcgcgcgcgtggtcaaccgcgacaacgcggcggtg
cacgtctccggccactgcaacgagggcgagctgttgtacatgtacaacattgtcaagccg
aggaacgcgatgccgatccacggcgagaaccgccatctcgtggccaacggcctgatcgcc
gtgaagaccggcatcgagcccgagaacgtcgtgctcgccgaggacggcgacgtcgtcgac
ctctaccacggcaaggccgccatcgtcggctccgtgccctgcggttacatctatgtggac
ggcgattcggtgggcgagctcaccgacgaggagctcgagaagcgccgcattctcggcacc
gagggcttcgtgtcatgcttcgccgtcgtcgacacggacgcggccgaggtggtctccgga
ccgaaggtgtacctcaacgccgttgctgaagacgaaagcgagttcgagaaggtgcgtcac
cagatcgtcgagcagctgcgcgacgcgatgatgacgggcacgaaagacacgcacaagctc
cagcagatcatgcgccgcacgctcggcggctgggtttcgcgcgagctcaagcgcaagccg
atgatcgtgccggtcgtggcggatgtcgccgccgacatgaacaagatggagtcgtacaac
gactga
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