Brevibacterium linens BS258: A2T55_13945
Help
Entry
A2T55_13945 CDS
T04319
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bly
Brevibacterium linens BS258
Pathway
bly03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A2T55_13945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bly03400
]
A2T55_13945
Enzymes [BR:
bly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A2T55_13945
DNA repair and recombination proteins [BR:
bly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A2T55_13945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMT94713
UniProt:
A0A142NPK7
LinkDB
All DBs
Position
complement(3163057..3165615)
Genome browser
AA seq
852 aa
AA seq
DB search
MAGHEQKVTVEGHRLTLSNLDKVLYPETGTTKGEILDYCARIAPHLIRHARDRIATRKRW
VDGVGTPDDPGDVFFEKNLPDSAPSWIRTRAIRHSTGTKRYPLVNDLATLTYLTQMAAIE
IHVPQWRVSAGAKDPGTIDAETRCPDRMVFDLDTGPGRGLADCIEVAQLVRELLEGMDLE
VYPVTSGSKGVHLYAPLDGSVSSQQVSDVAHELARSLEADHTNLIVSAMKKTLRENKVLI
DWSQNSASKTTVAPYSLRGRFTPLVAAPRRWDEFDDPAAVEQVRFEEVLDRVDEVGDLLE
PLAEAVGGTASAPESRADSESEADPKSDDAPKAERDRLEVYRSKRDPKRTSEPVPGKQGT
SGDELTFVIQEHHARSLHWDFRLEHDGVLVSWALPKGPPTDPGKNHLAVQTEDHPLEYGS
FEGTIPKGEYGAGDVEIWDAGTIEVEKWQEGKEIIAVLHGREDGGLGGVRRFALFNTGDH
GPNKEPEKNWMIHLMEDEPKKQSAAADDSSKKGTPTGRTSKKRAAQKEALPADLAPMLAS
IGDIGSLRREAEAWAFEMKWDGIRALARVQPGDGEHTGSIELTSRNGHDMTNTYPELHEL
VECIDVDCILDGEIVALGQGSRPDFGRLQRRMGLSRDSDIEREQRRTPVYLMLFDVLHAD
GSSLLRAPYTERRARLFELVTESEHIHVPEAFEGSVDAAFESSRKLRLEGVLAKRTDSVY
LPGKRTRTWAKLKHASTRDVIIVGWRTGEGERSSSFASLLVAAHDDEGLHYLGRVGTGFD
EAALRTLRSSLDRRSRKTPALTVPADESRDAHWVRPDLVGEVRFSGLTEAGRLRHPVWRG
LRSDIDAEDLRV
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggtcacgagcagaaggtcacggtcgagggtcatcgactgacattgagcaatctg
gacaaggttctctacccggagaccggcacgacgaagggggagatcctcgactactgcgcc
aggatcgccccgcacctcatccgccatgcccgggaccggatcgccacgcgcaaacgctgg
gtcgacggcgtcggcactcccgatgacccgggggacgtgttcttcgagaagaacctcccg
gactccgcaccgtcgtggatccgaacacgggcgatccggcactccacgggcaccaaacgc
tatcccctggtcaacgatcttgcgaccctgacctatctcacgcagatggccgcgatcgag
atccatgtgccccagtggagggtgagcgcgggagcgaaggaccccggcacaatcgacgcg
gagacccgctgccccgaccgcatggtcttcgacctggacacgggccccggacgcggcctc
gccgactgcatcgaggtggcccagctcgtgcgcgaactgctcgagggcatggacctggag
gtctacccggtgaccagcggatcgaaaggcgtccacctctatgcgccgctggacgggtcg
gtgagctcgcagcaggtctccgatgtcgcccatgagctcgcccgcagcctggaggccgac
cacacgaacctcatcgtctctgcgatgaagaagacgctgcgggagaacaaggtactcatc
gactggtcgcagaattcggcgtcgaagaccacggtggctccgtattcgctgcgcggacgc
ttcacccccttggtcgccgcaccgcgcaggtgggacgaattcgacgacccggccgccgtc
gagcaggtgcgcttcgaagaggtcctcgaccgggtcgatgaggtcggggacctcctcgag
cccctcgccgaggcggtcggaggaaccgcttcggccccggagtccagggccgattcggag
tccgaagccgacccgaagtcggacgatgccccgaaagccgagcgcgaccgactggaggtc
tatcggtccaaacgggatccgaagcgcacgagcgaacccgtgccagggaaacagggaacg
agcggggacgagctgactttcgtcatccaggaacaccatgcgaggagcctccactgggac
ttccgactcgaacacgatggagtattggtgtcctgggcgctgccgaaggggccgccgacc
gaccccgggaagaaccacctggcggtccagaccgaggatcaccccctcgaatacggcagc
ttcgaaggcacgatcccgaaaggggagtacggggccggcgacgtcgagatctgggacgca
ggcaccatcgaggtcgagaagtggcaagaaggcaaggagatcatcgcggtcctccacggg
cgtgaggacggcggtctcgggggagtgcggcggttcgccctgttcaacaccggtgaccac
ggaccgaacaaggagcccgagaagaactggatgatccacctcatggaggacgagccgaag
aagcagtcggcggcagcggacgactcatcgaagaagggcacgccgaccgggcgtacctcc
aagaagcgagccgcgcagaaggaggctctgccggcggatttggccccgatgctcgcaagc
atcggcgacatcggctccctccggcgggaggccgaggcttgggccttcgagatgaaatgg
gacggcatccgtgcgctggcgagggtgcagcccggtgacggggagcacaccggcagcatc
gagctgaccagtcgcaacggccatgacatgacgaacacgtacccggagcttcacgaactg
gtcgagtgtatcgatgtcgactgcatcctcgacggtgagatcgtcgccctcgggcagggc
agccgaccggacttcggacgcctccagcgcagaatggggctgagccgggacagcgatatc
gaacgggaacagcgacgcacccctgtctacctcatgctcttcgacgtcctccacgcggac
ggatcgtcgttgctgcgcgccccctatacggaacggcgcgcacgtctgttcgaactcgtg
accgagagcgagcacatccatgtgcccgaggccttcgagggaagcgtcgacgccgccttc
gaatccagtcggaagcttcgactcgaaggagtgctggcgaagcggaccgacagcgtctat
ctgcccggcaagcgcacccgcacctgggccaagctcaagcacgcctcgacccgcgatgtc
atcatcgtcggctggcggaccggagaaggagaacgctcatccagcttcgcctcgctattg
gtcgccgcccatgacgacgaagggctccactacctcggtcgcgtgggcaccgggttcgac
gaggcggccctgcggactctgcgctccagcctcgatcgccggtcgcggaagacgccggcg
ctcaccgtgccggccgacgagtcgcgagatgcccactgggtgcgacccgacctcgtcggg
gaggtccggttctctggcctgaccgaggccggacgtctgcggcacccggtctggcgcggc
ctgcgctccgacatcgacgcagaggacctccgagtctga
DBGET
integrated database retrieval system