KEGG   Brevibacterium linens BS258: A2T55_13945
Entry
A2T55_13945       CDS       T04319                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bly  Brevibacterium linens BS258
Pathway
bly03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A2T55_13945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bly03400]
    A2T55_13945
Enzymes [BR:bly01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A2T55_13945
DNA repair and recombination proteins [BR:bly03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A2T55_13945
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: AMT94713
UniProt: A0A142NPK7
LinkDB
Position
complement(3163057..3165615)
AA seq 852 aa
MAGHEQKVTVEGHRLTLSNLDKVLYPETGTTKGEILDYCARIAPHLIRHARDRIATRKRW
VDGVGTPDDPGDVFFEKNLPDSAPSWIRTRAIRHSTGTKRYPLVNDLATLTYLTQMAAIE
IHVPQWRVSAGAKDPGTIDAETRCPDRMVFDLDTGPGRGLADCIEVAQLVRELLEGMDLE
VYPVTSGSKGVHLYAPLDGSVSSQQVSDVAHELARSLEADHTNLIVSAMKKTLRENKVLI
DWSQNSASKTTVAPYSLRGRFTPLVAAPRRWDEFDDPAAVEQVRFEEVLDRVDEVGDLLE
PLAEAVGGTASAPESRADSESEADPKSDDAPKAERDRLEVYRSKRDPKRTSEPVPGKQGT
SGDELTFVIQEHHARSLHWDFRLEHDGVLVSWALPKGPPTDPGKNHLAVQTEDHPLEYGS
FEGTIPKGEYGAGDVEIWDAGTIEVEKWQEGKEIIAVLHGREDGGLGGVRRFALFNTGDH
GPNKEPEKNWMIHLMEDEPKKQSAAADDSSKKGTPTGRTSKKRAAQKEALPADLAPMLAS
IGDIGSLRREAEAWAFEMKWDGIRALARVQPGDGEHTGSIELTSRNGHDMTNTYPELHEL
VECIDVDCILDGEIVALGQGSRPDFGRLQRRMGLSRDSDIEREQRRTPVYLMLFDVLHAD
GSSLLRAPYTERRARLFELVTESEHIHVPEAFEGSVDAAFESSRKLRLEGVLAKRTDSVY
LPGKRTRTWAKLKHASTRDVIIVGWRTGEGERSSSFASLLVAAHDDEGLHYLGRVGTGFD
EAALRTLRSSLDRRSRKTPALTVPADESRDAHWVRPDLVGEVRFSGLTEAGRLRHPVWRG
LRSDIDAEDLRV
NT seq 2559 nt   +upstreamnt  +downstreamnt
gtggcaggtcacgagcagaaggtcacggtcgagggtcatcgactgacattgagcaatctg
gacaaggttctctacccggagaccggcacgacgaagggggagatcctcgactactgcgcc
aggatcgccccgcacctcatccgccatgcccgggaccggatcgccacgcgcaaacgctgg
gtcgacggcgtcggcactcccgatgacccgggggacgtgttcttcgagaagaacctcccg
gactccgcaccgtcgtggatccgaacacgggcgatccggcactccacgggcaccaaacgc
tatcccctggtcaacgatcttgcgaccctgacctatctcacgcagatggccgcgatcgag
atccatgtgccccagtggagggtgagcgcgggagcgaaggaccccggcacaatcgacgcg
gagacccgctgccccgaccgcatggtcttcgacctggacacgggccccggacgcggcctc
gccgactgcatcgaggtggcccagctcgtgcgcgaactgctcgagggcatggacctggag
gtctacccggtgaccagcggatcgaaaggcgtccacctctatgcgccgctggacgggtcg
gtgagctcgcagcaggtctccgatgtcgcccatgagctcgcccgcagcctggaggccgac
cacacgaacctcatcgtctctgcgatgaagaagacgctgcgggagaacaaggtactcatc
gactggtcgcagaattcggcgtcgaagaccacggtggctccgtattcgctgcgcggacgc
ttcacccccttggtcgccgcaccgcgcaggtgggacgaattcgacgacccggccgccgtc
gagcaggtgcgcttcgaagaggtcctcgaccgggtcgatgaggtcggggacctcctcgag
cccctcgccgaggcggtcggaggaaccgcttcggccccggagtccagggccgattcggag
tccgaagccgacccgaagtcggacgatgccccgaaagccgagcgcgaccgactggaggtc
tatcggtccaaacgggatccgaagcgcacgagcgaacccgtgccagggaaacagggaacg
agcggggacgagctgactttcgtcatccaggaacaccatgcgaggagcctccactgggac
ttccgactcgaacacgatggagtattggtgtcctgggcgctgccgaaggggccgccgacc
gaccccgggaagaaccacctggcggtccagaccgaggatcaccccctcgaatacggcagc
ttcgaaggcacgatcccgaaaggggagtacggggccggcgacgtcgagatctgggacgca
ggcaccatcgaggtcgagaagtggcaagaaggcaaggagatcatcgcggtcctccacggg
cgtgaggacggcggtctcgggggagtgcggcggttcgccctgttcaacaccggtgaccac
ggaccgaacaaggagcccgagaagaactggatgatccacctcatggaggacgagccgaag
aagcagtcggcggcagcggacgactcatcgaagaagggcacgccgaccgggcgtacctcc
aagaagcgagccgcgcagaaggaggctctgccggcggatttggccccgatgctcgcaagc
atcggcgacatcggctccctccggcgggaggccgaggcttgggccttcgagatgaaatgg
gacggcatccgtgcgctggcgagggtgcagcccggtgacggggagcacaccggcagcatc
gagctgaccagtcgcaacggccatgacatgacgaacacgtacccggagcttcacgaactg
gtcgagtgtatcgatgtcgactgcatcctcgacggtgagatcgtcgccctcgggcagggc
agccgaccggacttcggacgcctccagcgcagaatggggctgagccgggacagcgatatc
gaacgggaacagcgacgcacccctgtctacctcatgctcttcgacgtcctccacgcggac
ggatcgtcgttgctgcgcgccccctatacggaacggcgcgcacgtctgttcgaactcgtg
accgagagcgagcacatccatgtgcccgaggccttcgagggaagcgtcgacgccgccttc
gaatccagtcggaagcttcgactcgaaggagtgctggcgaagcggaccgacagcgtctat
ctgcccggcaagcgcacccgcacctgggccaagctcaagcacgcctcgacccgcgatgtc
atcatcgtcggctggcggaccggagaaggagaacgctcatccagcttcgcctcgctattg
gtcgccgcccatgacgacgaagggctccactacctcggtcgcgtgggcaccgggttcgac
gaggcggccctgcggactctgcgctccagcctcgatcgccggtcgcggaagacgccggcg
ctcaccgtgccggccgacgagtcgcgagatgcccactgggtgcgacccgacctcgtcggg
gaggtccggttctctggcctgaccgaggccggacgtctgcggcacccggtctggcgcggc
ctgcgctccgacatcgacgcagaggacctccgagtctga

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