Bartonella machadoae: LNM86_07090
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Entry
LNM86_07090 CDS
T08469
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmac
Bartonella machadoae
Pathway
bmac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LNM86_07090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmac03400
]
LNM86_07090 (mfd)
Enzymes [BR:
bmac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNM86_07090 (mfd)
DNA repair and recombination proteins [BR:
bmac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LNM86_07090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UNE55546
LinkDB
All DBs
Position
complement(1449106..1452606)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSMFKKIVIPQHLSAHMIFDGVTDGFEAFALVKLCSTMAQDKPLVYVVRDGTKIAHLQQV
LNFIEPNLPVFQFPAWDCLPYDRVSPGVAITARRLSTLTHIANLRQNPRAAILLTTANAI
IQKLPPREMIETQMIHARVGQRIHMRHLIQSLECNGFERVTVVRDVGEFAVRGGILDIFS
PVDSEPLRLDFFGDTLETIRVFDSETQRTTKQKTEFFLHSMSEVVLTPEYVNRFKSNYIR
TFGVSQKNNMLYEALSQGRRFSGMEHWLPFFYENLDSFFDYCDNFPLVFEHLIEEVLIER
YRLIEDYYNARKERENDKENSTSYPPIEPNLLYLTPEHILERAQHSGQRIDFTPFNVPQN
AGQTIVHANVKQGYDFVKERNAQEKNVFSSVVHHIASLRAAGKKVLLACWSEGSLNRLLQ
VLEEHGLQKIDIVKSLQTVRATPRNHITAAVIMIEHGFEVEDFAIITEQDILGDRLIRSP
KRRKNNKNFISEIAALNSGDIVVHIDHGIGQFIGLKTIKTTGILRDCLEIQYAGGDRLFL
PIENIELLSRYGSEGTDVTLDKLGGVGWQTRKTRLKKHLLEMAGQLIHIAAERALRSAPA
LVPPIGPFDEFVACFPYEETEDQMDAIDAVLDDLASGKPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHYKTFISRFQGLPIKIGHASRLVKTKELAQVKKGISNG
TIDIVIGTHALLSDAVHFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRT
LGLALSGIRELSLITTPPIDRMAVRTFITPFDALVIRETLLREYYRGGQSFYVCPRISDL
GFIEEYLKMHVPELKFVVAHGQMPAGQLDDIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEMFGLAALYQLRGRVGRSKQRAYALFTYPSGKVLTPAADRRLKVLQSLDTLGAG
FQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVIELKDGGHKEDKQWSPQIS
LGTTVMIPENFVPDLSLRMGLYRRLTELDDLEQINEFAAELIDRFGPLPLEVQHLLKVFY
IKTLCRKAHVEKLDTGPKGVVIQFRNNYFANSVALVQWIAKQGAMAKIRPDQSIALIRDW
STVNERLVGAADIMTQLVEMAEKNSV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgttcaaaaaaatagttattccccaacatctttctgcccatatgatctttgat
ggagtcactgatggatttgaagcctttgcactggttaaattgtgttcgacaatggcacag
gataaaccactcgtctatgttgtccgtgatggaacaaagattgcgcatttacagcaagtt
ttaaattttattgaacccaatttgcctgtctttcaattcccagcatgggattgtttaccc
tatgatcgtgtgtcccctggagttgctattacagcacgtcgtttgtcaactttaacccat
atagcaaatttgcgtcagaatccacgcgccgcaattctattaacaacagcaaatgcaatt
atacaaaaattacccccacgggaaatgattgaaactcagatgattcacgcacgggtcgga
caacgtattcatatgaggcatttaattcaatctttagaatgcaatggttttgagcgtgtt
acagttgttcgagatgttggtgaatttgctgtaagaggaggaattcttgatattttttct
cccgttgattctgagcctttgcggcttgattttttcggtgataccttagaaactattcgc
gtatttgattcagaaacacaaagaacaacaaagcaaaaaactgagtttttcttacactcg
atgagtgaagttgttcttacaccagaatatgtaaaccgatttaaaagcaattatattcgt
acattcggtgtatctcaaaaaaacaatatgctttatgaagcgctttctcaagggcgacgc
ttttccggtatggaacattggttgccgtttttttatgagaatcttgacagtttttttgac
tattgtgataattttcctcttgtttttgaacatctcatagaagaagttctcattgaacgt
tatcgccttatcgaagattattataatgcgcgcaaggagcgtgaaaatgataaagaaaat
tctacttcttatcctccgatagaacctaaccttctctatttaacaccagaacatatttta
gagcgtgcacaacactctggacagcgtattgactttacaccttttaatgttccacaaaat
gcaggacaaaccattgttcacgcaaatgttaaacagggatatgattttgtaaaagaacgt
aatgcacaagaaaagaatgttttctcaagtgttgttcatcatattgcctcattacgtgct
gcgggcaaaaaggtgcttttagcgtgttggagtgaaggatctctaaaccgtttgttacag
gtccttgaagagcatgggttgcaaaaaatagatattgtaaaatcgttacaaactgtcaga
gcgacaccacgtaatcatataacagcagctgttataatgatagagcacggctttgaagtg
gaagattttgctatcataacagagcaagatatccttggtgaccgattaataagatcacca
aaacggcgtaaaaacaataaaaattttatttctgagattgcggctttaaattctggcgat
atcgttgtgcatattgatcatggtattggacaatttattggtctaaaaaccattaagacc
actgggattttgcgcgattgtctggaaattcaatacgctggaggggatcggctcttttta
cctattgaaaatatcgaacttctttcacgttatggatcggagggaacggatgtcacgtta
gataaattaggtggggttggttggcaaactcgaaaaacacgactgaaaaaacatttattg
gaaatggctggtcagttgattcatatagcagcagagcgtgctctgcgttcggcgcctgct
ttagttccaccaattggaccatttgacgaatttgttgcatgttttccttatgaggaaaca
gaagatcaaatggatgcgattgatgcggttttagatgatttagcttcaggaaaaccgatg
gatcgcttgatatgtggtgatgttggttttggcaaaacggaagttgctatccgaagtgct
tttgttgcagcattgaatggctatcaggttgctgttgttgtgccaacaactttgctttca
cgacaacattacaaaacttttatttcccgttttcaaggattacccatcaaaattggccac
gcttcaagacttgtgaaaacaaaagaacttgcacaagttaaaaaaggaatttcaaatggg
acgattgatattgttattggaacgcatgccttattgagtgatgcagttcattttctacga
ttaggtcttcttatcattgatgaagagcaacattttggtgtcaaacataaagagcgttta
aaagagcttaaaagtgatattcatgttctcacactttcagcaacccctataccacgcact
ttagggctagcattatcaggtatacgtgaactttcattgataacgacgcctcccattgat
agaatggcagttcgtacctttattacaccttttgatgcacttgttatacgagaaacattg
cttcgagaatattaccgtggtgggcagagtttttatgtttgtcctcgcatctctgatctt
ggctttatagaagaatatctcaaaatgcatgttcccgaactcaaattcgttgttgctcat
gggcaaatgcctgctggacagcttgatgatattatgaatgcattttatgatggacaatat
gatgttctgctatcaacgactattattgaatcaggtcttgatattccaacagctaataca
ttaatcgtgcaccgtgctgagatgtttggtcttgccgctctctatcaattgcgtggtagg
gtagggcgttcaaaacaacgtgcttacgcactctttacctatccttctggtaaagtttta
acacctgctgctgatcgtcgccttaaagttttacaatctcttgatacgttgggagctggt
tttcaattggcaagtcatgacatggatattcgcggttcaggtaattttttaggtgaagag
caatctgggcatattaaagaagttggatttgagctctatcaaaaaatgcttgaagaagct
gtcattgaattaaaagatggcgggcataaggaagacaagcaatggtctcctcagatttca
cttggtaccactgttatgataccagaaaattttgtacctgacttatcactccgtatgggg
ctttatcgtcgtttgacagaattggatgatttggaacaaattaatgaatttgcagctgag
ttaatagatcgttttggtcctttaccacttgaagttcagcacctccttaaagtcttttat
atcaaaacattgtgtcgcaaagcacatgtagaaaaattagatactggaccaaagggtgtg
gtcatacagtttcgtaataattattttgcaaatagtgttgctcttgttcaatggattgca
aaacaaggcgcgatggcaaaaattcgtccagaccaaagtatcgctcttattcgtgattgg
tctaccgtaaatgaaagacttgttggggcagcggatattatgacacaacttgtagaaatg
gcagaaaaaaattctgtttag
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