KEGG   Burkholderia multivorans DDS 15A-1: DM80_5695
Entry
DM80_5695         CDS       T03292                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bmk  Burkholderia multivorans DDS 15A-1
Pathway
bmk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bmk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DM80_5695 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bmk03400]
    DM80_5695 (ligD)
Enzymes [BR:bmk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DM80_5695 (ligD)
DNA repair and recombination proteins [BR:bmk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DM80_5695 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AIO71183
LinkDB
Position
3:174202..176985
AA seq 927 aa
MAGKLDPYRRKRHFDATPEPEGTRRRRAPADAQPAERGRHPLRYVIQEHHARRLHYDFRL
ELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVIVWDEGTW
TPEGGLAKAREGYRAGKLKFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDDDARSAE
AYDVVAQQPGSVHDGATRGHATNGHARARRRGEKAAGKEPDAEADADTDADAPRARATKA
KRPPALSRVEGAVRAPLPERIAPQLATLVDAPPAHGDWRYELKFDGYRMLARIAGKGARR
RVTLMTREGRDWTPKLRALRDALAALEVDDAWLDGEAVVLGENGLPDFQLLQNALGSGQS
DAVTLFVFDLPYLNGYDLRDAPLTARRAQLEPLFDAADPARLRFSPDLGSDAAGLIANAC
DTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGYTEPTGSRHGFGALLLGVHEP
APNGKRTRGASPLRYVGRVGTGFDTRMLDKLAQLLREHERASSPFDPPPQGWSRTRVHWV
EPTLVAECEFAEWTGDGIVRQAAFVALREDKPASQIVREVARHPTTENTMDERTSSSARR
GRAAADTHDGGQDRAQHRAQERAPAARGKSAPDQVGQVRITHPERVLDRESGTRKIDLAH
YWERVAPWALPDLAGRPVSLVRAPQDIGGELFFQKHAERREIPFVTQHPGLDPGHGPLLS
IDSVDALIGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIEAAQLVRGLL
DELGLVSFCKTSGGKGLHVVVPITRHSGWDEMKDFSRAVAQHIAGALPDRFTATMGPRHR
RGKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIDWDEVPATTGGAQWTIDTVHERLDA
LERDPWEAYADTRQRITAAMRTRLAAR
NT seq 2784 nt   +upstreamnt  +downstreamnt
atggccggcaagctcgatccgtatcgccgcaagcgtcatttcgacgcgacgcccgaaccc
gaaggcacgcgccgccgccgcgcgccggccgacgcgcagccggccgagcgcggccggcat
ccgctgcgctacgtgatccaggagcatcatgcgcggcgcctgcattacgatttccggctc
gaactcgacggcacgctgaagtcgtgggccgtgccgaaagggccgagtttcgatccgtcg
gtcaagcggctcgcggtgcacgtcgaggatcatccgctcgaatacgcgtcgttcgaaggc
gagattccggcaggccattacggcgcgggctcggtgatcgtctgggacgagggcacgtgg
acgcccgagggcgggctcgcgaaggcgcgcgaaggctatcgcgccggcaagctgaaattc
cggctcgacggcgagaagctgcacggcggctgggcgctcgtgcgtagcggccgccaggaa
gggcggcaggagcagtggctgctgatcaaggagcgcgacgacgacgcgcgcagcgccgag
gcatacgacgtcgtcgcgcagcagcccggcagcgtgcacgacggcgccacgcgcgggcat
gcgacgaacgggcatgcgcgggcgcgccgacgcggcgagaaggcggccggcaaggagccc
gacgccgaggcggacgccgacaccgacgccgacgcgccacgcgcccgcgcgacgaaagcg
aaacggccgcctgcactgtcgcgcgtcgaaggcgcggtgcgtgcgccgctgccggagcgc
atcgcgccgcaactcgcgacgctcgtcgatgcgccgcccgcgcacggcgactggcgctac
gaactgaagttcgacggctaccggatgctcgcgcgtatcgcgggcaagggcgcgcggcgg
cgcgtgacgctgatgacgcgcgagggccgcgactggacgccgaagctgcgcgcgctgcgc
gatgcgctcgcggcactcgaggtcgacgatgcatggctcgacggcgaagcggtcgtgctc
ggcgagaacgggctgcccgatttccagctgctgcagaacgcgctcggttccgggcagtcg
gatgcggtcacgctgttcgtgttcgatctgccctatctgaacggctatgacctgcgcgat
gcgccgctgacggcacgccgcgcgcaactcgaaccgctgttcgacgccgccgatccggcg
cgcctgcgtttttcgccggatctcggcagcgatgcggccggactgatcgccaacgcgtgc
gacacgggcctcgaagggctgatcggcaagcgcgcggatgcacgctaccgcgcgggacgc
tcgccggcctggatcaagctcaaatgccggcgcaggcaggagttcgtgatcggcggctat
acggagccgaccggtagccgccacggcttcggcgcgctgctgctcggcgtgcacgagccg
gcgccgaacggcaagcgcacgcgcggcgcgtcgccgctgcgctacgtcggccgggtcggc
accggcttcgacacgcggatgctcgacaagctcgcgcagctgctgcgcgagcacgaacgc
gcgtcgtcgccgttcgatccgccgccgcaagggtggtcgcgcacgcgcgtccactgggtc
gagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggcgacggcatcgtgcgg
caggccgcgttcgtggcgctgcgcgaggacaagccggcgtcgcagatcgtcagggaagtc
gcacgccaccccaccacggagaacacgatggacgagcgcacgagctcatccgcgcggcgc
ggccgcgccgcggccgacacgcatgacggcgggcaagatcgcgcgcaacaccgcgcgcag
gaacgcgcgcccgccgcacgcggcaagtcggcgcccgatcaggtcggccaggtccgcatc
acgcatccggagcgcgtgctcgatcgcgagagcggcacgcgcaagatcgatctcgcgcac
tactgggaacgcgtcgcgccgtgggcgttgcccgatctcgcgggccgcccggtgtcgctc
gtgcgtgcgccgcaggacatcggcggcgagctgtttttccagaagcacgcggagcgccgc
gagattccgttcgtcacgcagcatccgggactcgaccccggacacggtccgctactgtcg
atcgacagcgtcgatgcgctgatcggcgccgcgcagatgggcacgatcgagctgcatacg
tggaacgcgcacgcgtcgaacatcgagcggccggaccggatcgtgttcgacctcgatccc
gatccggcgctgccgtggcgcacgatgatcgaggccgcgcagctcgtgcgcgggctgctc
gacgagctgggcctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtggtc
gtgccgatcacgcggcattcgggctgggacgagatgaaggacttctcgcgcgcagtcgcg
cagcacatcgcgggcgcgctgcccgaccgcttcacggcgacgatggggccgcgtcaccgg
cgcggcaagattttcatcgactatctgcgcaacggccgcggcgcgagcacgatcgccgcg
tattcggtgcgtgcgcggcccggcatgggcgtgtcggtgccgatcgactgggacgaagtg
ccggccacgacgggcggcgcgcagtggacgatcgacaccgtgcacgaacggctcgacgcg
ctcgagcgcgatccgtgggaagcgtacgcggacacgcgccagcgcatcacggccgcgatg
cgcacgcgcctcgccgcgcgctga

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