Bacillus velezensis JS25R: NG74_01370
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Entry
NG74_01370 CDS
T03423
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bmp
Bacillus velezensis JS25R
Pathway
bmp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NG74_01370 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmp03400
]
NG74_01370 (ykoU)
Enzymes [BR:
bmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NG74_01370 (ykoU)
DNA repair and recombination proteins [BR:
bmp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NG74_01370 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DUF2532
Motif
Other DBs
NCBI-ProteinID:
AIU81466
LinkDB
All DBs
Position
complement(1291528..1293363)
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AA seq
611 aa
AA seq
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MVLTMQPILTSEPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
ARCFQHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTESIESTADRRPCRFLAFD
LLVLEGAGTVSLPYVKRKRALSKLFKEANLPACPHHLAEEAIQYIPEHTDFDALWDKVVR
HDGEGVVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAIPI
ASVSHGMQAEEKNAVRTIMETHGKKQKSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQ
FEMDWTECTYQQLILRSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALE
FHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL
SIVLEQIKRKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgacgatgcagccgattttgacctctgaaccgcctgaaggcagtgagtggcgc
tatgaggtaaagtatgacggattccgctgtcttctccgcatagacgaaagcggcgttaca
ttaaccagcagaaacggacagacgctgacgaatcaatttccggaaatcacggcttttgcg
gcccggtgttttcagcacatgaaagacaggttccccattacgcttgacggagagcttgtc
tatttaatcaatccgtacagagcggactttgagcatcttcaaatccgcggacgtttaaaa
cggacggaatcaattgaaagcaccgctgatagacggccgtgccgctttctggcatttgat
ctcctcgttctggaaggcgccggcaccgtctcattaccgtatgtgaaacggaagcgcgcc
ctttccaaactgtttaaagaagcaaatcttcccgcctgccctcatcacttagcggaagaa
gcgattcaatacattccggaacacactgactttgatgcgctttgggacaaggtcgtccgc
catgacggagaaggtgtcgtagcaaaaagagcatcaagcggctgggcggaaaataaacgc
tctcccgactggcaaaagtataaacatatgaaaacggcacatgtgctattaaccgggttt
aatccgaagaacgggtatgtaacagcctctgttttaaaagacggcaccgccatcccgatc
gcttccgtttcccacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggag
acccacggaaaaaaacaaaaaagcggcgagtatacacttgagccttctatctgcatgacc
gtgcagtatttaaccatattgcaggacacgctgcgtgaagtatcttttgtgtcttttcag
tttgaaatggattggacggaatgcacgtatcagcagcttatcctccgctctaaaacgctg
ccgccgaagctgcagttcacaagcctggataagatcgtttttaaaaaacgtgaaaaaacg
aaagcagatttccttagttatatggtgaaaatgagcgattttcttatgccctttcttaaa
gatcgggccgtcacggtgatccgttatccgcacggcgcgcctggcgaatctttttttcaa
aaaaacaaaccggactacacgccggactttgtctcaagcgtgtttgacgggagccacgag
cacatcgtatgcagcagcataccgtcacttctatggctggccaatcagctggcgcttgaa
tttcacgttccgtttcagacagtgcattctgaaagacccgcagagattgtcattgacctt
gatcctccgtcaaggaatgattttcccatggcagtggaggctgcgcatgtgctgaaacag
ctgtttgactcattcagcattacgtcattcccgaagctctccggaaataaaggcattcag
ctctacatcccgctttcaccggaagcattcacctatgaagaaacccgtgcgttcacaatg
ctcatcgccgattattgcgtcaggacgcgcccggatctttttacgacagagcggtttatc
aaaaaccgaaacggcaggctctacctagattatttgcagcatgccgaagggaaaaccatt
atcgccccttattcgacccggggcaacgaattgggaacggttgcggctcccctttattgg
agcgaagtcaactcctctttaacacctgatgattatacgatcgatacagtagtgaaccgc
gtcaggacagagggagatccgttttatgatttttaccggaatccgcaggacggcccgctt
tcaatcgtgcttgagcaaatcaagagaaagagctga
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