Burkholderia multivorans ATCC BAA-247: NP80_5544
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Entry
NP80_5544 CDS
T03881
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bmul
Burkholderia multivorans ATCC BAA-247
Pathway
bmul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bmul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NP80_5544 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmul03400
]
NP80_5544 (ligD)
Enzymes [BR:
bmul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NP80_5544 (ligD)
DNA repair and recombination proteins [BR:
bmul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NP80_5544 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJY14871
LinkDB
All DBs
Position
3:356012..358792
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AA seq
926 aa
AA seq
DB search
MAGKLDPYRRKRHFDATPEPEGTRRRRAPADAQPAERGRHPLRYVIQEHHARRLHYDFRL
ELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVIVWDEGTW
APEGGLAKAREGYRAGKLKFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDDDARSAD
AYDVVAQQPGSVHDGAARGRAANGRAANGHARARRRGEKAAGKEADAEAHADTDAPRTRA
TKAKRPPALSRVEGAVRAPLPERVAPQLATLVDAPPTHGDWRYELKFDGYRMLARIAGKG
ARRHVTLMTREGRDWTPKLRALRDALAALDVDDAWLDGEAVVLGENGLPDFQRLQNALGS
GQSDAVTLFVFDLPYLNGYDLRDAPLTARRAQLEPLFDDADPARLRFSPDLGSDAAGLIA
NACDTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGYTEPTGSRHGFGALLLGV
HEPAPNGKRTRGAAPLRYVGRVGTGFDTRMLDKLAPLLRERERASPPFDPPPQGWSRTRV
HWVEPTLVAECEFAEWTGDGIVRQAAFVALREDKPASQIVREVARHPTTENTMDERTTSS
ARRGRAAADTHDGGQERAQHRTPAARGKSAPDQVGQVRITHPERVLDRESGTRKIDLAHY
WERVAPWALPDLAGRPVSLVRAPQDIGGELFFQKHAERREIPFVTQHPGLDPGHGPLLSI
DSVDALIGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIEAAQLVRGLLD
ELGLVSFCKTSGGKGLHVVVPITRHSGWDEMKDFSRAVAQHIAGALPDRFTATMGPRHRR
GKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIGWDEVPATTGGAQWTIDTVHERLDAL
EHDPWEAYAGTRQRITAAMRTRLAAR
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgatccgtatcgccgcaagcgtcatttcgacgcgacgcccgaaccc
gaaggcacgcgccgccgccgcgcgccggccgacgcgcagccggccgagcgcggccggcat
ccgctgcgctacgtgatccaggagcatcacgcgcggcgcctgcattacgatttccggctc
gaactcgacggcacgctgaagtcgtgggccgtgccgaaagggccgagtttcgatccgtcg
gtcaagcggctcgcggtgcacgtcgaggatcatccgctcgaatacgcgtcgttcgaaggc
gagattccggccggccattacggcgcgggctcggtgatcgtctgggacgagggcacgtgg
gcgccggagggcgggctcgcgaaggcgcgcgaaggctatcgcgcaggcaagctgaaattc
cggctcgacggcgagaagctgcacggcggctgggcgctcgtgcgcagcggccgccaggaa
gggcggcaggagcagtggctgctgatcaaggagcgcgacgacgacgcgcgcagcgccgat
gcgtacgacgtcgtcgcgcagcagcccggcagcgtgcacgacggcgcggcgcgcgggcgc
gcggcgaacgggcgcgcggcgaacgggcatgcgcgggcgcgccggcgcggtgagaaagcg
gccggcaaggaggccgacgccgaggcgcacgccgacaccgacgcgccgcgcacccgcgcg
acgaaagcgaaacggccgcccgcgctgtcgcgcgtcgaaggcgcggtgcgcgcgccattg
ccggagcgcgtcgcgccgcagctcgcgacgctcgtcgatgcgccgcccacgcacggcgac
tggcgctacgaactgaagttcgacggctaccggatgctcgcgcgcatcgcgggcaagggc
gcgcggcggcacgtgacgctgatgacgcgcgagggccgcgactggacgccgaagctgcgc
gcgctgcgcgatgcgctcgcggcgctcgacgtcgacgatgcatggctcgacggcgaagcg
gtcgtgctcggcgagaacgggctgcccgatttccagcggctgcagaacgcgctcggttcc
gggcagtcggatgcggtcacgctgttcgtgttcgatctgccctacctgaacggctatgac
ctgcgcgatgcgccgctgaccgcacgccgcgcgcaactcgaaccgctgttcgacgacgcc
gatccggcgcgcctgcggttttcgccggatctcggcagcgatgcggccggactgatcgcg
aacgcgtgcgacacgggcctcgaagggctgatcggcaagcgcgcggacgcacgctaccgc
gcgggacgctccccggcctggatcaagctcaaatgccggcgccggcaggagttcgtgatc
ggcggctatacggagccgaccggcagccgccacggcttcggcgcgctgctgctcggcgtg
cacgaaccggcgccgaacggcaagcgcacgcgcggcgcggcgccgctgcgctacgtcggc
cgtgtcggtaccggcttcgacacgcggatgctcgacaagctcgcgccgctgctgcgcgag
cgcgaacgcgcgtcgccgccgttcgatccgccgccgcaagggtggtcgcgcacgcgcgtc
cactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggcgacggc
atcgtgcgacaagccgcgttcgtggcgctgcgcgaggacaagccggcgtcgcagatcgtc
agggaagtcgcacgccaccccaccacggagaacacgatggacgagcgcacgacctcatcc
gcgcggcgcggccgcgccgccgccgacacgcacgatggcgggcaagaacgcgcgcagcat
cgcacgcccgccgcacgcggcaagtcggcgcccgatcaggtcggccaggtccgcatcacg
catccggaacgcgtgctcgatcgcgagagcggcacgcgcaagatcgatctcgcgcactac
tgggagcgcgtcgcgccgtgggcgctgcccgatctcgcgggccgcccggtgtcgctcgtg
cgcgcgccgcaggacatcggcggcgagctgtttttccagaagcatgcggagcgccgcgag
attccgttcgtcacgcagcatccgggactcgatcccggacacggtccgctgctgtcgatc
gacagcgtcgatgcgctgatcggcgccgcgcagatggggacgatcgaactgcatacgtgg
aacgcgcacgcgtcgaacatcgagcggccggaccggatcgtgttcgacctcgatcccgat
cccgcgctgccgtggcgcacgatgatcgaggccgcgcagctcgtgcgcgggctgctcgac
gagctgggcctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtg
ccgatcacgcggcattcgggctgggacgagatgaaggacttctcgcgcgcggtcgcgcag
cacatcgcgggcgcgctgcccgaccgcttcacggcgacgatggggccgcgtcaccggcgc
ggcaagatcttcatcgactatctgcgcaacgggcgtggcgcgagcacgatcgcggcctac
tcggtgcgtgcgcggccgggcatgggcgtgtcggtgccgatcggttgggacgaagtgccg
gccacgacgggcggcgcgcagtggacgatcgacaccgtgcacgaacggctcgacgcgctc
gagcacgatccgtgggaagcgtacgcaggcacgcgccagcggatcacggccgcgatgcgc
acgcgcctcgccgcgcgctga
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