KEGG   Burkholderia multivorans ATCC BAA-247: NP80_5544Help
Entry
NP80_5544         CDS       T03881                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bmul  Burkholderia multivorans ATCC BAA-247
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bmul00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    NP80_5544 (ligD)
Enzymes [BR:bmul01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NP80_5544 (ligD)
DNA repair and recombination proteins [BR:bmul03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NP80_5544 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
3:356012..358792
Genome map
AA seq 926 aa AA seqDB search
MAGKLDPYRRKRHFDATPEPEGTRRRRAPADAQPAERGRHPLRYVIQEHHARRLHYDFRL
ELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVIVWDEGTW
APEGGLAKAREGYRAGKLKFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDDDARSAD
AYDVVAQQPGSVHDGAARGRAANGRAANGHARARRRGEKAAGKEADAEAHADTDAPRTRA
TKAKRPPALSRVEGAVRAPLPERVAPQLATLVDAPPTHGDWRYELKFDGYRMLARIAGKG
ARRHVTLMTREGRDWTPKLRALRDALAALDVDDAWLDGEAVVLGENGLPDFQRLQNALGS
GQSDAVTLFVFDLPYLNGYDLRDAPLTARRAQLEPLFDDADPARLRFSPDLGSDAAGLIA
NACDTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGYTEPTGSRHGFGALLLGV
HEPAPNGKRTRGAAPLRYVGRVGTGFDTRMLDKLAPLLRERERASPPFDPPPQGWSRTRV
HWVEPTLVAECEFAEWTGDGIVRQAAFVALREDKPASQIVREVARHPTTENTMDERTTSS
ARRGRAAADTHDGGQERAQHRTPAARGKSAPDQVGQVRITHPERVLDRESGTRKIDLAHY
WERVAPWALPDLAGRPVSLVRAPQDIGGELFFQKHAERREIPFVTQHPGLDPGHGPLLSI
DSVDALIGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIEAAQLVRGLLD
ELGLVSFCKTSGGKGLHVVVPITRHSGWDEMKDFSRAVAQHIAGALPDRFTATMGPRHRR
GKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIGWDEVPATTGGAQWTIDTVHERLDAL
EHDPWEAYAGTRQRITAAMRTRLAAR
NT seq 2781 nt NT seq  +upstreamnt  +downstreamnt
atggccggcaagctcgatccgtatcgccgcaagcgtcatttcgacgcgacgcccgaaccc
gaaggcacgcgccgccgccgcgcgccggccgacgcgcagccggccgagcgcggccggcat
ccgctgcgctacgtgatccaggagcatcacgcgcggcgcctgcattacgatttccggctc
gaactcgacggcacgctgaagtcgtgggccgtgccgaaagggccgagtttcgatccgtcg
gtcaagcggctcgcggtgcacgtcgaggatcatccgctcgaatacgcgtcgttcgaaggc
gagattccggccggccattacggcgcgggctcggtgatcgtctgggacgagggcacgtgg
gcgccggagggcgggctcgcgaaggcgcgcgaaggctatcgcgcaggcaagctgaaattc
cggctcgacggcgagaagctgcacggcggctgggcgctcgtgcgcagcggccgccaggaa
gggcggcaggagcagtggctgctgatcaaggagcgcgacgacgacgcgcgcagcgccgat
gcgtacgacgtcgtcgcgcagcagcccggcagcgtgcacgacggcgcggcgcgcgggcgc
gcggcgaacgggcgcgcggcgaacgggcatgcgcgggcgcgccggcgcggtgagaaagcg
gccggcaaggaggccgacgccgaggcgcacgccgacaccgacgcgccgcgcacccgcgcg
acgaaagcgaaacggccgcccgcgctgtcgcgcgtcgaaggcgcggtgcgcgcgccattg
ccggagcgcgtcgcgccgcagctcgcgacgctcgtcgatgcgccgcccacgcacggcgac
tggcgctacgaactgaagttcgacggctaccggatgctcgcgcgcatcgcgggcaagggc
gcgcggcggcacgtgacgctgatgacgcgcgagggccgcgactggacgccgaagctgcgc
gcgctgcgcgatgcgctcgcggcgctcgacgtcgacgatgcatggctcgacggcgaagcg
gtcgtgctcggcgagaacgggctgcccgatttccagcggctgcagaacgcgctcggttcc
gggcagtcggatgcggtcacgctgttcgtgttcgatctgccctacctgaacggctatgac
ctgcgcgatgcgccgctgaccgcacgccgcgcgcaactcgaaccgctgttcgacgacgcc
gatccggcgcgcctgcggttttcgccggatctcggcagcgatgcggccggactgatcgcg
aacgcgtgcgacacgggcctcgaagggctgatcggcaagcgcgcggacgcacgctaccgc
gcgggacgctccccggcctggatcaagctcaaatgccggcgccggcaggagttcgtgatc
ggcggctatacggagccgaccggcagccgccacggcttcggcgcgctgctgctcggcgtg
cacgaaccggcgccgaacggcaagcgcacgcgcggcgcggcgccgctgcgctacgtcggc
cgtgtcggtaccggcttcgacacgcggatgctcgacaagctcgcgccgctgctgcgcgag
cgcgaacgcgcgtcgccgccgttcgatccgccgccgcaagggtggtcgcgcacgcgcgtc
cactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggcgacggc
atcgtgcgacaagccgcgttcgtggcgctgcgcgaggacaagccggcgtcgcagatcgtc
agggaagtcgcacgccaccccaccacggagaacacgatggacgagcgcacgacctcatcc
gcgcggcgcggccgcgccgccgccgacacgcacgatggcgggcaagaacgcgcgcagcat
cgcacgcccgccgcacgcggcaagtcggcgcccgatcaggtcggccaggtccgcatcacg
catccggaacgcgtgctcgatcgcgagagcggcacgcgcaagatcgatctcgcgcactac
tgggagcgcgtcgcgccgtgggcgctgcccgatctcgcgggccgcccggtgtcgctcgtg
cgcgcgccgcaggacatcggcggcgagctgtttttccagaagcatgcggagcgccgcgag
attccgttcgtcacgcagcatccgggactcgatcccggacacggtccgctgctgtcgatc
gacagcgtcgatgcgctgatcggcgccgcgcagatggggacgatcgaactgcatacgtgg
aacgcgcacgcgtcgaacatcgagcggccggaccggatcgtgttcgacctcgatcccgat
cccgcgctgccgtggcgcacgatgatcgaggccgcgcagctcgtgcgcgggctgctcgac
gagctgggcctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtg
ccgatcacgcggcattcgggctgggacgagatgaaggacttctcgcgcgcggtcgcgcag
cacatcgcgggcgcgctgcccgaccgcttcacggcgacgatggggccgcgtcaccggcgc
ggcaagatcttcatcgactatctgcgcaacgggcgtggcgcgagcacgatcgcggcctac
tcggtgcgtgcgcggccgggcatgggcgtgtcggtgccgatcggttgggacgaagtgccg
gccacgacgggcggcgcgcagtggacgatcgacaccgtgcacgaacggctcgacgcgctc
gagcacgatccgtgggaagcgtacgcaggcacgcgccagcggatcacggccgcgatgcgc
acgcgcctcgccgcgcgctga

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