Brassica napus (rape): 106401467
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Entry
106401467 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106401467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106401467
03012 Translation factors [BR:
bna03012
]
106401467
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106401467
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106401467
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106401467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
ATPase
nSTAND3
AAA_19
Dicer_dimer
T2SSE
AAA_11
PhoH
Motif
Other DBs
NCBI-GeneID:
106401467
NCBI-ProteinID:
XP_013697444
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All DBs
Position
A6:26794747..26801081
Genome browser
AA seq
1135 aa
AA seq
DB search
MKDRLPPPSLYVPPHQRLRSTPPAYAFHPLPLPHTQSQKPPLLPTRFVSAYDDSVSEVAS
LPEPVAFHCANLGEWRRNLSMLLRDPVKQEVISREKKDRRDFDKLAALATSLGLYSQAYA
KVVVFSKIPLPNYRFDLDDKRPLREVSVHTDLVKRVDAYLKEHLSKKSKRTNGIPANSFS
RTSSTSSMATDEGLLEQPELPAASKTALDNILWQRSLQLRERQDYWEKSVEGQRMLECRR
CLPAYKQRDVVLSAISQNQVIVVSGETGCGKTTQIPQFILESEIEANRGALCSIICTQPR
KISAMSVSERVACERGEPLGESVGYKVRLEGVRGRDTRLLFCTTGILLRRLLVDRSLRGV
THVIVDEIHERGMNEDFLLIILKDLLPRRPELKLILMSATLDAELFSSYFGGAGVIHIPG
FTYPVGSYFLEDILEMSRYRLTPYNQIDDYGQERLWKMNKQIPRKRKSQIASVVEDALRA
ADFKEFSPETRVSLSCWNPDCIGFNLIESLLCHICENERPGGILVFMTGWDDISSLKDKL
QIHPIFSDPNRVMLLACHGSMASFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVI
DCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGQCYHLYPKCLYDAFAEYQ
LPEILRTPLQSLCLQIKSLNFGTISEFLSRALQSPELLAVQKAIEYLKTIGALDENEQLT
ALGRYLAKLPMEPKLGKMLILGAILGCLDTILTVAAGLSVRDPFLTPLDKKDLAEAAKSQ
FSRDHSDHLALVRAYEGYKRAEEEAGVYDYCWKNFLSIQSMRAVDSLRKEFFSLLKDTGL
IDGTPATCKSGGNDENLTRAVICYGLYPGICSVVHNERAFSLKTMEDGQVLLYSNSVNAR
ETKIPYPWLVFNEKIKVNSIFVRDSTAVSDSVLILFGGSVSKGDFDGHLKMLGGYLDFFM
KPAVAEMYQTLKKELDELIQSKLLNPKMDIQAHRDLLLAVRLLVSEDRCDGSFVFGRQAL
KPLGTSAVSTQPTLVSRTESGPGGDNSKSQLQTMLTRAGHAAPMYKTKQLKNSKFQSTVE
FNGTQIMGQPCSNKKTAEKDAAAEAIRWLMGGAKESHEHVNHMSNLLKRSKKVHL
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcgtcttcctcctccttccctctacgttccgcctcaccagcgacttcgctcc
acccctccagcttacgcctttcatcctcttcctctcccccacacgcaatctcaaaagcca
ccgctcttgcccactcgctttgtctcggcctacgatgacagcgtttccgaggttgcttca
ctccctgagccggttgcatttcattgtgccaacttgggtgaatggagaaggaacttgtct
atgcttttgcgcgatcctgtaaagcaagaagttatttccagggagaagaaagatcgaagg
gattttgataaacttgctgcactcgctacaagtcttggattgtatagtcaagcatatgct
aaggttgttgtgttcagtaagatcccactccccaactataggtttgatcttgatgacaag
agacctctgagggaggtgagtgtgcatacggaccttgtaaaaagagttgatgcttacctc
aaagaacacctcagtaaaaaatcaaagaggacgaatggtatccctgcgaattccttctca
agaactagtagcacaagcagtatggccaccgatgaagggcttcttgagcaacctgagctc
ccggctgccagcaagacggcgctggacaacattctttggcagaggagtttacagctgcgt
gaacgacaagactattgggagaaatccgtagaaggtcaaagaatgctggaatgtcgcaga
tgtctccctgcatataagcagagggatgtggtactgtcagcgatatcacaaaaccaggtt
attgttgtctctggagaaacaggttgtggcaagaccacacaaattccacagtttatttta
gaatcggagattgaagcaaaccgtggagctttatgcagtatcatatgtactcaaccaaga
aaaatatctgctatgtctgtttcggagagggttgcttgcgagagaggagagccgttgggt
gaatccgttggatataaagttcgattggaaggtgttagaggaagagatacgcggctactg
ttttgcaccacaggcattttgttgagaaggttgttggtagatcgaagtttaagaggagtt
actcatgttatcgtcgatgaaattcatgagcgtggaatgaatgaagatttcttgcttatc
attcttaaagatctcctacctcgccgcccagagcttaagctgattctgatgagtgcaact
ttagatgctgagcttttctcgtcatactttggtggggcaggtgtaattcacattccaggc
tttacgtatccagttggtagttatttcttagaggatattctggagatgtccaggtacaga
ttgactccgtacaatcaaattgatgattatggtcaagaaagattgtggaagatgaacaaa
cagatcccaagaaaaaggaagagccaaattgcgtctgttgtggaggatgcactgagagcg
gctgatttcaaggagtttagccctgagactcgagtctctttatcttgttggaatcctgat
tgtattggttttaatcttatagaatctctcctttgccatatatgtgagaatgagaggcct
ggtggtattttagtttttatgactggatgggatgatatcagctctctgaaagataaactc
cagattcatccaatctttagcgatccaaaccgggttatgttgcttgcttgccatggttct
atggcaagctttgagcagaggttaatatttgaagaacctgcaagtggagtgagaaagata
gttctggccactaatatcgctgaaacgagcatcacgatcaatgatgttgcttttgttatc
gactgtggaaaggcaaaagagacatcctatgatgcattgaataacaccccgtgtttgctt
ccttcgtggatttccaaggtttcagctcagcagagaagaggaagagctggtcgtgttcaa
cctggccagtgttaccatctgtacccaaagtgcctatatgatgcttttgcagaatatcag
ttgcctgaaattttgagaacgcctttacagtcactgtgtctacaaatcaaaagcttaaat
ttcggaaccatatctgagttcttatcaagggcactgcaatctccagaactattggcggtt
caaaaggccattgaatatcttaagacaataggggcattggatgagaatgaacagctcaca
gctctaggtcgttatttggcgaagcttcccatggagccaaagcttggaaaaatgctcata
ctaggagctattctaggttgccttgataccatattgactgttgcggctggcctgagtgtg
agagatcctttcttgacacctctggacaagaaggatctcgcagaagccgccaaatcccag
ttttcacgtgatcacagtgatcatcttgcacttgttcgggcatatgaagggtataaaaga
gctgaggaagaggctggggtttatgattactgctggaaaaactttctctcaatacagtcg
atgagagctgttgattctctccgaaaagagttcttctcattactcaaggataccggatta
atagatggaactccagcgacctgcaagtcaggagggaatgatgagaatcttacccgagca
gttatttgctatggattgtatccaggaatctgctcggttgtgcataatgagagagcattt
tccttgaagactatggaggatggccaagttcttctttattcgaattctgtaaatgctcgg
gaaacaaaaataccatatccgtggttggttttcaacgagaagataaaagtgaactctata
ttcgtgagggattcaacagctgtgtctgactctgtgcttatcctctttggcggtagcgtt
tccaaaggagattttgatggccacctcaaaatgttgggaggatacttggattttttcatg
aaacctgctgttgcagagatgtaccagaccttgaagaaagagcttgacgagctgatacag
agcaaattacttaatcctaaaatggatattcaagcacaccgtgacctcttattggctgta
aggttattggtctctgaggatagatgtgatgggagctttgtgtttggtcggcaagcactt
aagcctttaggaacgtcggcggtgtcaacacaaccgacattggtttcaaggaccgaaagt
gggccggggggtgacaattccaagagtcagctccaaacaatgctcacaagggctggtcat
gcagcaccgatgtataagacaaagcagttgaagaacagcaagttccaatccacagtagag
tttaacgggacgcaaataatgggacaaccttgcagcaacaagaagactgctgagaaggat
gctgcagctgaagctatacgatggctgatgggtggggctaaggaaagccatgagcacgtg
aatcatatgtcaaacctgctgaagagaagcaagaaggttcacctctga
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